Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QQE96_RS16320 Genome accession   NZ_CP133987
Coordinates   2342949..2344352 (-) Length   467 a.a.
NCBI ID   WP_168522834.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337949..2349352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS16285 (QQE96_16345) moaE 2338543..2338998 (-) 456 WP_168522822.1 molybdopterin synthase catalytic subunit MoaE -
  QQE96_RS16290 (QQE96_16350) moaD 2339000..2339245 (-) 246 WP_168522824.1 molybdopterin synthase sulfur carrier subunit -
  QQE96_RS16295 (QQE96_16355) moaC 2339297..2339776 (-) 480 WP_168522826.1 cyclic pyranopterin monophosphate synthase MoaC -
  QQE96_RS16300 (QQE96_16360) moaB 2339786..2340298 (-) 513 WP_053310205.1 molybdenum cofactor biosynthesis protein B -
  QQE96_RS16305 (QQE96_16365) moaA 2340384..2341373 (-) 990 WP_168522828.1 GTP 3',8-cyclase MoaA -
  QQE96_RS16310 (QQE96_16370) - 2341685..2342575 (+) 891 WP_168522830.1 YvcK family protein -
  QQE96_RS16315 (QQE96_16375) luxU 2342599..2342943 (-) 345 WP_168522832.1 quorum-sensing phosphorelay protein LuxU -
  QQE96_RS16320 (QQE96_16380) luxO 2342949..2344352 (-) 1404 WP_168522834.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QQE96_RS16325 (QQE96_16385) uvrB 2344596..2346626 (-) 2031 WP_168522836.1 excinuclease ABC subunit UvrB -
  QQE96_RS16335 (QQE96_16395) tnpA 2347411..2347848 (+) 438 WP_168521467.1 IS200/IS605 family transposase -
  QQE96_RS16340 (QQE96_16400) - 2348043..2349281 (+) 1239 WP_168522839.1 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51960.27 Da        Isoelectric Point: 5.2397

>NTDB_id=878112 QQE96_RS16320 WP_168522834.1 2342949..2344352(-) (luxO) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MQSSLSIRKTKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKDQY
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLRDDIGNPGNQNYQGFIGSSQTMQSVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELANG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKNVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVIDRFTQYEWPGNVRQLQNVLRNVVVLNQGSEIQLTMLPPPLNQVLDNQI
RIPNSNSETDKKSVTVHDIFPLWLIEKQAIEQAIDACDGNIPKAAGYLDVSPSTIYRKIQAWNAEEN

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=878112 QQE96_RS16320 WP_168522834.1 2342949..2344352(-) (luxO) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGCAATCGAGTTTATCAATACGGAAGACTAAGTATCTTCTGATGGTCGAAGATACTGCGTCTGTTGCGGCGTTGTATCG
TTCTTATTTAACGCCTCTTGAAATCGATATTAATATCGTCGGGACCGGCCGCGACGCAATAGAAAGCTTGGCCCATCGAG
AGCCAGATTTAATTTTGCTCGATCTTCGATTACCGGATATGACTGGTATGGACGTTTTGCACGCGGTCAAAGATCAATAT
CCTGACGTCCCTGTGATTTTCATGACAGCACACGGTTCGATTGATACTGCCGTTGAAGCAATGCGTCATGGGGCACAAGA
CTTTCTGATTAAACCCTGTGAAGCGGACCGTTTGCGTGTCACGGTCAATAACGCCATTCGTAAAGCAAGCAAATTACGAG
ATGACATCGGTAATCCGGGTAATCAGAATTACCAAGGTTTTATTGGAAGTAGTCAAACTATGCAGTCGGTTTATCGCACA
ATTGATTCTGCCGCAACCAGTAAAGCCAGTATTTTTATCACAGGTGAGAGTGGTACAGGTAAAGAGGTGTGCGCCGAAGC
GATTCATGCTGCGAGTAAGCGCGGTGATAAACCGTTTATTGCCATCAATTGCGCGGCGATTCCTAAAGATTTGATAGAAA
GTGAGTTGTTTGGTCACGTCAAAGGTGCATTTACTGGTGCAGCCACCGACCGACAAGGTGCTGCCGAGTTAGCCAATGGT
GGTACTCTATTCTTGGATGAATTGTGTGAAATGGACTTGGATTTACAAACCAAGCTATTGCGTTTTATACAAACGGGTAC
ATTCCAAAAAGTCGGCTCGTCTAAAATGAAAAATGTGGATGTACGTTTTGTTTGCGCAACCAACCGTGATCCTTGGAAAG
AAGTTCAAGAAGGGCGCTTTCGAGAAGATTTGTACTATCGACTGTATGTAATCCCTTTGCATTTACCCCCTTTGCGAGAA
CGAGGTGATGATGTTATTGAAATCGCCTATTCGTTGTTAGGTTTCATGTCGAAAGAAGAAGGGAAAGGCTTTGTTCGTCT
TGCGCCTGAAGTGATTGATCGTTTTACACAGTATGAATGGCCCGGTAATGTGCGCCAGCTACAAAACGTTTTACGTAACG
TTGTTGTTTTGAACCAAGGCAGTGAGATCCAACTTACCATGTTGCCACCACCTTTGAATCAAGTGCTGGATAATCAAATC
CGTATCCCCAATTCGAATTCAGAGACTGATAAAAAAAGTGTCACCGTACACGATATTTTTCCACTATGGTTAATAGAGAA
GCAAGCCATTGAACAGGCGATTGATGCTTGCGATGGCAATATTCCTAAAGCCGCGGGTTATTTAGATGTTAGCCCTTCAA
CTATTTATCGTAAAATCCAAGCATGGAACGCTGAAGAGAATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.062

96.788

0.833
  pilR Pseudomonas aeruginosa PAK

37.143

97.43

0.362