Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   WOC70_RS12555 Genome accession   NZ_CP150742
Coordinates   2519409..2520671 (+) Length   420 a.a.
NCBI ID   WP_153171519.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22707     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514409..2525671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC70_RS12520 (WOC70_12520) infC 2514937..2515464 (+) 528 WP_001791162.1 translation initiation factor IF-3 -
  WOC70_RS12525 (WOC70_12525) rpmI 2515493..2515693 (+) 201 WP_001125540.1 50S ribosomal protein L35 -
  WOC70_RS12530 (WOC70_12530) rplT 2515740..2516096 (+) 357 WP_341262068.1 50S ribosomal protein L20 -
  WOC70_RS12535 (WOC70_12535) - 2516238..2516846 (+) 609 WP_000032657.1 NUDIX domain-containing protein -
  WOC70_RS12540 (WOC70_12540) - 2516865..2517794 (+) 930 WP_001280022.1 hypothetical protein -
  WOC70_RS12545 (WOC70_12545) - 2517799..2517909 (+) 111 WP_001790560.1 hypothetical protein -
  WOC70_RS12550 (WOC70_12550) tig 2517957..2519258 (+) 1302 WP_000127573.1 trigger factor -
  WOC70_RS12555 (WOC70_12555) clpX 2519409..2520671 (+) 1263 WP_153171519.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  WOC70_RS12560 (WOC70_12560) yihA 2520825..2521415 (+) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  WOC70_RS12565 (WOC70_12565) hemA 2521632..2522978 (+) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  WOC70_RS12570 (WOC70_12570) - 2523000..2523815 (+) 816 WP_001157329.1 cytochrome c biogenesis protein -
  WOC70_RS12575 (WOC70_12575) hemC 2523857..2524783 (+) 927 WP_001230232.1 hydroxymethylbilane synthase -
  WOC70_RS12580 (WOC70_12580) - 2524805..2525473 (+) 669 WP_341262069.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46355.51 Da        Isoelectric Point: 4.2469

>NTDB_id=878090 WOC70_RS12555 WP_153171519.1 2519409..2520671(+) (clpX) [Staphylococcus aureus strain TUM22707]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEDTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=878090 WOC70_RS12555 WP_153171519.1 2519409..2520671(+) (clpX) [Staphylococcus aureus strain TUM22707]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGATACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.203

94.048

0.529