Detailed information    

insolico Bioinformatically predicted

Overview


Name   vicK   Type   Regulator
Locus tag   RIM75_RS03470 Genome accession   NZ_CP133957
Coordinates   669653..671005 (+) Length   450 a.a.
NCBI ID   WP_012679848.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HT1112     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 664653..676005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM75_RS03445 (RIM75_03445) - 664783..665322 (+) 540 WP_042357092.1 hypothetical protein -
  RIM75_RS03450 (RIM75_03450) - 665319..666434 (+) 1116 WP_012679851.1 acetyl-CoA C-acyltransferase -
  RIM75_RS03455 (RIM75_03455) - 666424..667686 (+) 1263 WP_012679850.1 AMP-binding protein -
  RIM75_RS03460 (RIM75_03460) - 667732..668751 (+) 1020 WP_317583013.1 DUF3114 domain-containing protein -
  RIM75_RS03465 (RIM75_03465) vicR 668950..669660 (+) 711 WP_012515994.1 response regulator YycF Regulator
  RIM75_RS03470 (RIM75_03470) vicK 669653..671005 (+) 1353 WP_012679848.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RIM75_RS03475 (RIM75_03475) vicX 671009..671818 (+) 810 WP_042357090.1 MBL fold metallo-hydrolase Regulator
  RIM75_RS03485 (RIM75_03485) - 673463..675088 (+) 1626 WP_012679845.1 restriction endonuclease FokI C-terminal domain-containing protein -

Sequence


Protein


Download         Length: 450 a.a.        Molecular weight: 51530.96 Da        Isoelectric Point: 5.5741

>NTDB_id=877970 RIM75_RS03470 WP_012679848.1 669653..671005(+) (vicK) [Streptococcus equi subsp. equi strain HT1112]
MTKDIIGNLSAFELAILLLLVFVAFYFIHLAIRDYRNARIIRLMSHKIRDLINGRYTDTINEKADIELMELSEQLNDLSD
VFRLTHENLAQEKNRLASILAYMTDGVLATNRSGKIIMINETAQKQLNLNREQALEKNITDLLDSDSPYTYRELVSKTPI
VTLNRRNDTGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITS
IWLEIDNDKMTQVIENILNNAIKYSPDGGKIIVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGAG
LGLAIAKEIIKQRRGFIWAKSDYGKGSTFTIVLPYEKDAAIYDEWEDDID

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=877970 RIM75_RS03470 WP_012679848.1 669653..671005(+) (vicK) [Streptococcus equi subsp. equi strain HT1112]
ATGACTAAGGACATCATTGGAAACCTTTCTGCATTTGAGCTAGCCATACTCTTATTGCTTGTTTTTGTTGCTTTTTATTT
CATTCATTTAGCCATTCGTGATTATCGCAATGCTCGGATCATTCGTCTGATGAGCCATAAGATAAGAGATTTGATCAATG
GTCGCTATACTGATACGATCAATGAAAAGGCTGATATTGAATTGATGGAGCTGTCTGAGCAGCTCAACGACCTATCAGAT
GTTTTTCGTCTGACCCATGAAAACCTTGCCCAAGAGAAAAATCGTCTTGCTAGTATTTTGGCTTATATGACAGATGGGGT
CCTTGCGACCAATCGTTCCGGCAAGATTATCATGATTAATGAGACTGCTCAAAAGCAGCTCAATTTAAATCGTGAGCAGG
CGCTGGAAAAAAACATTACAGATTTATTAGACAGTGACTCACCTTACACCTACCGAGAGCTGGTCTCAAAAACACCGATT
GTGACCTTAAATCGTCGTAATGACACAGGAGAGTTTGTTTCGCTGCGGCTGCGTTTTGCGCTTAATAGGCGAGAGAGCGG
CTTTATTTCAGGTCTAGTTGTTGTGCTTCATGACACGACTGAGCAGGAAAAGGAGGAGCGTGAGCGCAGACTCTTTGTCT
CAAATGTTAGCCATGAGCTTCGCACACCTTTGACCTCTGTCAAGTCATACCTAGAGGCTCTAGATGAGGGCGCGCTAAAG
GAGGACATAGCCCCAAGCTTTATAAAGGTCTCACTAGACGAAACCAATCGCATGATGCGCATGATTTCAGATTTGCTCAA
TCTATCAAGAATTGATAATCATGTGACACAGCTGTCTGTTGAAATGACCAACTTTACAGCCTTTATGACCTCTATCTTAA
ACCGCTTTGATTTGGTGAAAAATCAGCACACCAGTACAGGAAAATCCTATGAAATTGTCAGAGATTACCCTATCACCTCT
ATTTGGCTAGAAATTGATAACGATAAAATGACGCAGGTCATTGAAAATATTTTAAACAATGCCATCAAATATTCACCTGA
TGGTGGGAAAATTATCGTAAACATGAAAACAACAGATACCCAGCTAATCATTTCGATTTCTGATGAGGGATTGGGCATAC
CAAAGAAGGACCTGCCTTTGATTTTTGACCGTTTTTACCGAGTGGATAAGGCTAGAAGTCGGGCGCAGGGGGGGGCCGGC
TTAGGGCTGGCTATTGCTAAAGAAATTATTAAGCAGCGCCGCGGCTTTATCTGGGCTAAGAGTGACTATGGCAAGGGGTC
AACCTTTACCATTGTGTTACCTTACGAAAAGGATGCTGCTATCTATGATGAATGGGAGGATGATATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

73.188

92

0.673

  micB Streptococcus pneumoniae Cp1015

66.353

94.444

0.627