Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCX11_RS10995 Genome accession   NZ_AP024726
Coordinates   2194376..2194771 (-) Length   131 a.a.
NCBI ID   WP_000932692.1    Uniprot ID   A0A641A2P1
Organism   Staphylococcus aureus strain 59482     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2189376..2199771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS10970 thiE 2189838..2190479 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  OCX11_RS10975 thiM 2190472..2191272 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  OCX11_RS10980 thiD 2191256..2192086 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OCX11_RS10985 tenA 2192079..2192768 (-) 690 WP_000396077.1 thiaminase II -
  OCX11_RS10990 sceD 2193292..2193987 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  OCX11_RS10995 ssb 2194376..2194771 (-) 396 WP_000932692.1 single-stranded DNA-binding protein Machinery gene
  OCX11_RS11000 - 2194965..2195405 (+) 441 WP_000846746.1 YwpF-like family protein -
  OCX11_RS11005 fabZ 2195463..2195903 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OCX11_RS11010 murA 2195937..2197202 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OCX11_RS11015 - 2197313..2197546 (-) 234 WP_000384523.1 DUF1146 family protein -
  OCX11_RS11020 - 2197678..2197770 (-) 93 WP_031864518.1 hypothetical protein -
  OCX11_RS11025 - 2198108..2198512 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15114.16 Da        Isoelectric Point: 5.2452

>NTDB_id=87793 OCX11_RS10995 WP_000932692.1 2194376..2194771(-) (ssb) [Staphylococcus aureus strain 59482]
MLNKIVIVERLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=87793 OCX11_RS10995 WP_000932692.1 2194376..2194771(-) (ssb) [Staphylococcus aureus strain 59482]
ATGCTAAATAAAATCGTAATTGTCGAGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

100

100

1
  ssb Staphylococcus aureus N315

99.237

100

0.992

Multiple sequence alignment