Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   RIM74_RS02575 Genome accession   NZ_CP133955
Coordinates   493660..494982 (+) Length   440 a.a.
NCBI ID   WP_050316425.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488660..499982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS02550 (RIM74_02550) - 489093..489734 (+) 642 WP_012679992.1 response regulator transcription factor -
  RIM74_RS02555 (RIM74_02555) - 489767..491167 (+) 1401 WP_042357171.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RIM74_RS02560 (RIM74_02560) - 491167..491529 (+) 363 WP_012516140.1 S1 RNA-binding domain-containing protein -
  RIM74_RS02565 (RIM74_02565) cysK 491916..492842 (-) 927 WP_012679990.1 cysteine synthase A -
  RIM74_RS02570 (RIM74_02570) - 492963..493604 (-) 642 WP_012679989.1 YigZ family protein -
  RIM74_RS02575 (RIM74_02575) comFA/cflA 493660..494982 (+) 1323 WP_050316425.1 DEAD/DEAH box helicase Machinery gene
  RIM74_RS02580 (RIM74_02580) - 495042..495623 (+) 582 WP_042357144.1 ComF family protein -
  RIM74_RS02585 (RIM74_02585) hpf 495699..496247 (+) 549 WP_012679953.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50017.12 Da        Isoelectric Point: 9.7002

>NTDB_id=877855 RIM74_RS02575 WP_050316425.1 493660..494982(+) (comFA/cflA) [Streptococcus equi subsp. equi strain HTP133]
MENIENYYGRLLPERQCPKAVSAWACSLQSMITKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
ASFPKGHYLRWQGQLTTYQAAISHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVNKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEVYHRSPIIVATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPIIELAEQCCQL
LHKYFPKETIAHASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=877855 RIM74_RS02575 WP_050316425.1 493660..494982(+) (comFA/cflA) [Streptococcus equi subsp. equi strain HTP133]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAAGGCAATGCCCAAAGGCTGTTTCTGCCTGGGCTTGCAG
CTTACAAAGCATGATCACTAAAAAGGGAACGTTATACTGCCAACGCTGTAGCAGTTTAATTGAGAAGGCTCATCAGCTGC
CTAGCGGTGCTTACTACTGTAGAGCCTGTCTTGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTTCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACGACATATCAGGCAGCTATCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACCTTAGTTCATGCGGTTACTGGTGCTGGCAAAACAGAGATGATGTATGAAGCTA
TTGCAGCAGTTGTTAATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTTTGCATAGAGCTTGAAAAACGA
CTATCGCGAGACTTTTCCTGTCAAGTCTGCCTTATGCATGCTGAGTCAGAGGTTTATCATAGAAGCCCCATTATCGTTGC
CACAACACATCAATTGATGACCTTTTACCATGCTTTTGATCTGCTCATTATTGACGAAGTAGATGCCTTCCCCTTTGTCA
ATAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGATTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACGTTGGCAAGAAGATTCCATGGCAAGCCCTTAGT
TGTTCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGTGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACCGGCTATCCTCTTTTAATCTTTTTTCCGATTATTGAGCTGGCTGAGCAATGCTGTCAGCTG
CTCCACAAGTATTTTCCTAAGGAAACTATTGCTCATGCTTCCAGTCAGTCATCAAATCGAATGGCTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCAACCGTAGATGTCTTTG
TCTTATTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAAATTTCAGGTCGCGTTGGGCGCTCTTTGGAAAGA
CCTGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTCAAGGCAGTGCGGGAGATAAAGGACATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-396)

DEAD/DEAH box helicase (DEAD)

(101-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis SK321

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae D39

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae R6

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae Rx1

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae TIGR4

52.471

96.591

0.507
  comFA/cflA Streptococcus mitis NCTC 12261

52.235

96.591

0.505
  comFA Lactococcus lactis subsp. cremoris KW2

47.959

89.091

0.427