Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCX11_RS08255 Genome accession   NZ_AP024726
Coordinates   1684551..1685237 (-) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain 59482     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1679551..1690237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS08235 rpsT 1680465..1680716 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  OCX11_RS08240 holA 1680761..1681735 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  OCX11_RS08245 comEC 1681792..1683993 (-) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OCX11_RS08250 - 1683998..1684459 (-) 462 WP_000439693.1 ComE operon protein 2 -
  OCX11_RS08255 comEA 1684551..1685237 (-) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  OCX11_RS08260 - 1685277..1685993 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  OCX11_RS08265 rsfS 1685996..1686349 (-) 354 WP_001088022.1 ribosome silencing factor -
  OCX11_RS08270 yqeK 1686350..1686934 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OCX11_RS08275 nadD 1686924..1687493 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OCX11_RS08280 yhbY 1687496..1687786 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  OCX11_RS08285 aroE 1687790..1688596 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  OCX11_RS08290 yqeH 1688610..1689710 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=87782 OCX11_RS08255 WP_001793467.1 1684551..1685237(-) (comEA) [Staphylococcus aureus strain 59482]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=87782 OCX11_RS08255 WP_001793467.1 1684551..1685237(-) (comEA) [Staphylococcus aureus strain 59482]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment