Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   RIM63_RS10425 Genome accession   NZ_CP133952
Coordinates   49946..50044 (+) Length   32 a.a.
NCBI ID   WP_200831644.1    Uniprot ID   A0A380KSQ5
Organism   Streptococcus equi subsp. zooepidemicus strain HT321     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 44946..55044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM63_RS00275 (RIM63_00275) - 45656..47122 (+) 1467 WP_317584261.1 hypothetical protein -
  RIM63_RS00280 (RIM63_00280) purB 47358..48650 (+) 1293 WP_037582405.1 adenylosuccinate lyase -
  RIM63_RS00285 (RIM63_00285) comR 48949..49863 (+) 915 WP_115251528.1 XRE family transcriptional regulator Regulator
  RIM63_RS10425 comS 49946..50044 (+) 99 WP_200831644.1 quorum-sensing system DWW-type pheromone Regulator
  RIM63_RS00290 (RIM63_00290) ruvB 50078..51079 (+) 1002 WP_111677625.1 Holliday junction branch migration DNA helicase RuvB -
  RIM63_RS00295 (RIM63_00295) - 51372..51830 (+) 459 WP_126436186.1 low molecular weight protein-tyrosine-phosphatase -
  RIM63_RS00300 (RIM63_00300) - 51836..52237 (+) 402 WP_037582396.1 membrane protein -
  RIM63_RS00305 (RIM63_00305) - 52234..54015 (+) 1782 WP_317584266.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3869.63 Da        Isoelectric Point: 8.5430

>NTDB_id=877796 RIM63_RS10425 WP_200831644.1 49946..50044(+) (comS) [Streptococcus equi subsp. zooepidemicus strain HT321]
MFKKYQYYLLLAALLLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=877796 RIM63_RS10425 WP_200831644.1 49946..50044(+) (comS) [Streptococcus equi subsp. zooepidemicus strain HT321]
ATGTTTAAAAAATATCAATACTATCTGCTTTTAGCTGCTTTACTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380KSQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

56.667

93.75

0.531
  comS Streptococcus pyogenes MGAS315

40.625

100

0.406