Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | RIM64_RS04885 | Genome accession | NZ_CP133951 |
| Coordinates | 1000956..1002185 (+) | Length | 409 a.a. |
| NCBI ID | WP_043053130.1 | Uniprot ID | A0A7Z8ZVZ1 |
| Organism | Streptococcus equi subsp. zooepidemicus strain JMC111 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 970613..1053063 | 1000956..1002185 | within | 0 |
Gene organization within MGE regions
Location: 970613..1053063
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIM64_RS04750 (RIM64_04750) | - | 970613..971212 (+) | 600 | WP_043025924.1 | glycoside hydrolase family 73 protein | - |
| RIM64_RS04755 (RIM64_04755) | - | 971774..971971 (+) | 198 | WP_012677866.1 | helix-turn-helix transcriptional regulator | - |
| RIM64_RS04760 (RIM64_04760) | - | 971976..972431 (+) | 456 | WP_231197709.1 | hypothetical protein | - |
| RIM64_RS04765 (RIM64_04765) | - | 972517..972747 (+) | 231 | WP_014622960.1 | hypothetical protein | - |
| RIM64_RS04770 (RIM64_04770) | - | 972829..973041 (+) | 213 | Protein_876 | conjugal transfer protein TraA | - |
| RIM64_RS04775 (RIM64_04775) | - | 973155..974513 (+) | 1359 | WP_043025923.1 | SLC13 family permease | - |
| RIM64_RS04780 (RIM64_04780) | - | 974959..975669 (+) | 711 | WP_012515717.1 | glycoside hydrolase family 73 protein | - |
| RIM64_RS04785 (RIM64_04785) | - | 975897..976277 (+) | 381 | WP_037580974.1 | DUF1149 family protein | - |
| RIM64_RS04790 (RIM64_04790) | - | 976277..977125 (+) | 849 | WP_165619348.1 | DegV family protein | - |
| RIM64_RS04795 (RIM64_04795) | - | 977225..978436 (+) | 1212 | WP_172458526.1 | CCA tRNA nucleotidyltransferase | - |
| RIM64_RS04800 (RIM64_04800) | - | 978429..980297 (+) | 1869 | WP_165619346.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| RIM64_RS04805 (RIM64_04805) | - | 980402..982147 (+) | 1746 | WP_165619345.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS04810 (RIM64_04810) | - | 982147..983919 (+) | 1773 | WP_165619343.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS04815 (RIM64_04815) | gdhA | 984060..985409 (+) | 1350 | WP_231148074.1 | NADP-specific glutamate dehydrogenase | - |
| RIM64_RS04820 (RIM64_04820) | - | 985541..985951 (+) | 411 | WP_165619340.1 | peptide deformylase | - |
| RIM64_RS04825 (RIM64_04825) | - | 986144..988150 (-) | 2007 | WP_165619338.1 | 5'-nucleotidase C-terminal domain-containing protein | - |
| RIM64_RS04830 (RIM64_04830) | - | 988600..990321 (+) | 1722 | WP_042670727.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS04835 (RIM64_04835) | - | 990323..992074 (+) | 1752 | WP_111692494.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS04840 (RIM64_04840) | mvk | 992605..993483 (+) | 879 | WP_111690158.1 | mevalonate kinase | - |
| RIM64_RS04845 (RIM64_04845) | mvaD | 993465..994409 (+) | 945 | WP_043039013.1 | diphosphomevalonate decarboxylase | - |
| RIM64_RS04850 (RIM64_04850) | - | 994402..995400 (+) | 999 | WP_115266871.1 | phosphomevalonate kinase | - |
| RIM64_RS04855 (RIM64_04855) | fni | 995403..996395 (+) | 993 | WP_165619337.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| RIM64_RS04860 (RIM64_04860) | - | 996680..997963 (-) | 1284 | WP_207625207.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| RIM64_RS04865 (RIM64_04865) | - | 997950..999128 (-) | 1179 | WP_115266873.1 | hydroxymethylglutaryl-CoA synthase | - |
| RIM64_RS04870 (RIM64_04870) | - | 999313..1000152 (+) | 840 | WP_043029774.1 | thymidylate synthase | - |
| RIM64_RS04875 (RIM64_04875) | - | 1000233..1000730 (+) | 498 | WP_165619333.1 | dihydrofolate reductase | - |
| RIM64_RS04880 (RIM64_04880) | - | 1000750..1000920 (+) | 171 | WP_012515696.1 | hypothetical protein | - |
| RIM64_RS04885 (RIM64_04885) | clpX | 1000956..1002185 (+) | 1230 | WP_043053130.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| RIM64_RS04890 (RIM64_04890) | yihA | 1002195..1002794 (+) | 600 | WP_012677890.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| RIM64_RS04895 (RIM64_04895) | - | 1002931..1004187 (+) | 1257 | WP_231148149.1 | ISL3 family transposase | - |
| RIM64_RS04900 (RIM64_04900) | - | 1004585..1007587 (+) | 3003 | WP_115266876.1 | leucine-rich repeat domain-containing protein | - |
| RIM64_RS04905 (RIM64_04905) | clpC | 1007777..1009870 (-) | 2094 | WP_115266877.1 | AAA family ATPase | Regulator |
| RIM64_RS04910 (RIM64_04910) | ndk | 1010241..1010660 (+) | 420 | WP_012515690.1 | nucleoside-diphosphate kinase | - |
| RIM64_RS04915 (RIM64_04915) | - | 1011161..1011967 (+) | 807 | WP_012677893.1 | DNA/RNA non-specific endonuclease | - |
| RIM64_RS04920 (RIM64_04920) | - | 1012257..1013222 (-) | 966 | WP_021320810.1 | polysaccharide deacetylase family protein | - |
| RIM64_RS04925 (RIM64_04925) | - | 1013393..1014676 (+) | 1284 | WP_165619429.1 | homoserine dehydrogenase | - |
| RIM64_RS04930 (RIM64_04930) | thrB | 1014678..1015538 (+) | 861 | WP_165619430.1 | homoserine kinase | - |
| RIM64_RS04935 (RIM64_04935) | - | 1015720..1016979 (+) | 1260 | WP_165619431.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| RIM64_RS04940 (RIM64_04940) | folE | 1017037..1017603 (+) | 567 | WP_037584183.1 | GTP cyclohydrolase I FolE | - |
| RIM64_RS04945 (RIM64_04945) | folP | 1017611..1018411 (+) | 801 | WP_115266883.1 | dihydropteroate synthase | - |
| RIM64_RS04950 (RIM64_04950) | folB | 1018418..1018777 (+) | 360 | WP_012679532.1 | dihydroneopterin aldolase | - |
| RIM64_RS04955 (RIM64_04955) | folK | 1018774..1019280 (+) | 507 | WP_042670696.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| RIM64_RS04960 (RIM64_04960) | murB | 1019376..1020263 (+) | 888 | WP_165619432.1 | UDP-N-acetylmuramate dehydrogenase | - |
| RIM64_RS04965 (RIM64_04965) | - | 1020309..1021463 (+) | 1155 | WP_043040630.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS04970 (RIM64_04970) | - | 1021447..1022241 (+) | 795 | WP_165619433.1 | ABC transporter permease | - |
| RIM64_RS04975 (RIM64_04975) | - | 1022238..1023014 (+) | 777 | WP_115266885.1 | ABC transporter permease | - |
| RIM64_RS04980 (RIM64_04980) | - | 1023007..1024080 (+) | 1074 | WP_014622920.1 | PotD/PotF family extracellular solute-binding protein | - |
| RIM64_RS04985 (RIM64_04985) | - | 1024239..1025771 (+) | 1533 | WP_115266886.1 | ClC family H(+)/Cl(-) exchange transporter | - |
| RIM64_RS04990 (RIM64_04990) | - | 1025976..1026590 (+) | 615 | WP_282884739.1 | SGNH/GDSL hydrolase family protein | - |
| RIM64_RS04995 (RIM64_04995) | - | 1026900..1028027 (+) | 1128 | WP_206152516.1 | AI-2E family transporter | - |
| RIM64_RS05000 (RIM64_05000) | radC | 1028179..1028856 (+) | 678 | WP_012677909.1 | DNA repair protein RadC | - |
| RIM64_RS05005 (RIM64_05005) | - | 1028858..1029553 (-) | 696 | WP_115266888.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| RIM64_RS05010 (RIM64_05010) | - | 1029565..1030209 (-) | 645 | WP_012677911.1 | redox-sensing transcriptional repressor Rex | - |
| RIM64_RS05015 (RIM64_05015) | - | 1030495..1030842 (-) | 348 | WP_012515669.1 | DUF1831 domain-containing protein | - |
| RIM64_RS05020 (RIM64_05020) | - | 1030832..1031959 (-) | 1128 | WP_012677912.1 | cysteine desulfurase family protein | - |
| RIM64_RS05025 (RIM64_05025) | - | 1031962..1032936 (-) | 975 | WP_012515667.1 | ribose-phosphate diphosphokinase | - |
| RIM64_RS05030 (RIM64_05030) | - | 1033071..1033643 (-) | 573 | WP_012515666.1 | CYTH domain-containing protein | - |
| RIM64_RS05035 (RIM64_05035) | - | 1033738..1034409 (+) | 672 | WP_014622912.1 | GTP pyrophosphokinase family protein | - |
| RIM64_RS05040 (RIM64_05040) | - | 1034384..1035220 (+) | 837 | WP_038674269.1 | NAD kinase | - |
| RIM64_RS05045 (RIM64_05045) | - | 1035217..1036113 (+) | 897 | WP_012677914.1 | RluA family pseudouridine synthase | - |
| RIM64_RS05050 (RIM64_05050) | pta | 1036124..1037125 (+) | 1002 | WP_115266890.1 | phosphate acetyltransferase | - |
| RIM64_RS05055 (RIM64_05055) | - | 1037225..1037983 (+) | 759 | WP_282884740.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| RIM64_RS05060 (RIM64_05060) | - | 1038087..1038773 (-) | 687 | WP_012677917.1 | hypothetical protein | - |
| RIM64_RS05065 (RIM64_05065) | - | 1039017..1039745 (+) | 729 | WP_042670679.1 | ABC transporter ATP-binding protein | - |
| RIM64_RS05070 (RIM64_05070) | - | 1039738..1041270 (+) | 1533 | WP_165619307.1 | ABC transporter permease/substrate-binding protein | - |
| RIM64_RS05075 (RIM64_05075) | guaC | 1041630..1042613 (+) | 984 | WP_038674275.1 | GMP reductase | - |
| RIM64_RS05080 (RIM64_05080) | - | 1042799..1043380 (+) | 582 | WP_043029749.1 | xanthine phosphoribosyltransferase | - |
| RIM64_RS05085 (RIM64_05085) | - | 1043676..1044617 (-) | 942 | WP_317583240.1 | FAD:protein FMN transferase | - |
| RIM64_RS05090 (RIM64_05090) | - | 1044672..1044857 (-) | 186 | WP_012515655.1 | 4-oxalocrotonate tautomerase | - |
| RIM64_RS05095 (RIM64_05095) | - | 1045044..1045613 (+) | 570 | WP_012515653.1 | thymidine kinase | - |
| RIM64_RS05100 (RIM64_05100) | prfA | 1045655..1046737 (+) | 1083 | WP_014622900.1 | peptide chain release factor 1 | - |
| RIM64_RS05105 (RIM64_05105) | prmC | 1046734..1047582 (+) | 849 | WP_165619306.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| RIM64_RS05110 (RIM64_05110) | - | 1047554..1048147 (+) | 594 | WP_042670674.1 | L-threonylcarbamoyladenylate synthase | - |
| RIM64_RS05115 (RIM64_05115) | - | 1048161..1048592 (+) | 432 | WP_021320793.1 | GNAT family N-acetyltransferase | - |
| RIM64_RS05120 (RIM64_05120) | glyA | 1048604..1049863 (+) | 1260 | WP_115266895.1 | serine hydroxymethyltransferase | - |
| RIM64_RS05125 (RIM64_05125) | - | 1049866..1050843 (+) | 978 | WP_043029741.1 | nucleoid-associated protein | - |
| RIM64_RS05130 (RIM64_05130) | - | 1050844..1051446 (+) | 603 | WP_042670666.1 | lysozyme family protein | - |
| RIM64_RS05135 (RIM64_05135) | nox | 1051696..1053063 (+) | 1368 | WP_012677930.1 | H2O-forming NADH oxidase | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45157.67 Da Isoelectric Point: 4.5698
>NTDB_id=877709 RIM64_RS04885 WP_043053130.1 1000956..1002185(+) (clpX) [Streptococcus equi subsp. zooepidemicus strain JMC111]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLDILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVTKVRITKEAVEG
QSKPVLEIA
Nucleotide
Download Length: 1230 bp
>NTDB_id=877709 RIM64_RS04885 WP_043053130.1 1000956..1002185(+) (clpX) [Streptococcus equi subsp. zooepidemicus strain JMC111]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTCCTTGATATTTTAAACCAATACGTCATTGGTCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTATAATCATTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTGGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAGGGTGTCCAGCAAGCTTTGCTAAAAATCA
TTGAAGGAACGGTTGCCAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGCAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTCCTTGATATTTTAAACCAATACGTCATTGGTCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTATAATCATTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAAAAGTCAAACATTCTGATGATTGGACCAACAGGCTCAGGAAAGACCTTTTTGGCACAGACCCTGGCTAAGA
GTCTGAATGTTCCGTTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAAGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAGGGTGTCCAGCAAGCTTTGCTAAAAATCA
TTGAAGGAACGGTTGCCAGTGTTCCACCACAGGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATCGTCGGAGGCGCTTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGAGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCTTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACTGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCCCTTGTGAAGCAATATCAAGCCTTATTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGCAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAACCAAGGTACGCATTACTAAGGAAGCTGTCGAGGGT
CAATCAAAGCCCGTTTTAGAGATAGCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
88.753 |
100 |
0.888 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
59.102 |
98.044 |
0.579 |