Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   OCX11_RS02615 Genome accession   NZ_AP024726
Coordinates   553246..553815 (+) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   A0A641A2F3
Organism   Staphylococcus aureus strain 59482     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548246..558815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS02590 cysE 549459..550106 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  OCX11_RS02595 cysS 550090..551490 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  OCX11_RS02600 - 551483..551887 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  OCX11_RS02605 rlmB 551895..552641 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCX11_RS02610 - 552641..553165 (+) 525 WP_000664738.1 NYN domain-containing protein -
  OCX11_RS02615 sigH 553246..553815 (+) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  OCX11_RS02620 rpmG 553930..554073 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  OCX11_RS02625 secE 554129..554311 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  OCX11_RS02630 nusG 554324..554872 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  OCX11_RS02635 rplK 555053..555475 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  OCX11_RS02640 rplA 555683..556375 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  OCX11_RS02645 rplJ 556647..557147 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  OCX11_RS02650 rplL 557190..557558 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  OCX11_RS02655 - 557733..558341 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=87763 OCX11_RS02615 WP_000872877.1 553246..553815(+) (sigH) [Staphylococcus aureus strain 59482]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=87763 OCX11_RS02615 WP_000872877.1 553246..553815(+) (sigH) [Staphylococcus aureus strain 59482]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641A2F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment