Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   RHN62_RS06955 Genome accession   NZ_CP133937
Coordinates   1483275..1483820 (-) Length   181 a.a.
NCBI ID   WP_241951131.1    Uniprot ID   -
Organism   Pasteurella multocida strain AKS2021-HT3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478275..1488820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHN62_RS06930 - 1478485..1478922 (-) 438 WP_005758199.1 isoprenylcysteine carboxylmethyltransferase family protein -
  RHN62_RS06935 - 1479135..1479746 (-) 612 WP_241951129.1 YfgM family protein -
  RHN62_RS06940 hisS 1479765..1481036 (-) 1272 WP_241951130.1 histidine--tRNA ligase -
  RHN62_RS06945 ispG 1481066..1482169 (-) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  RHN62_RS06950 - 1482196..1483152 (-) 957 WP_014391405.1 RodZ family helix-turn-helix domain-containing protein -
  RHN62_RS06955 pilF/pilF2 1483275..1483820 (-) 546 WP_241951131.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  RHN62_RS06960 - 1483860..1485044 (-) 1185 WP_005725120.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  RHN62_RS06965 - 1485223..1486476 (-) 1254 WP_005725114.1 AI-2E family transporter -
  RHN62_RS06970 glnB 1486477..1486815 (-) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  RHN62_RS06975 mog 1486860..1487438 (-) 579 WP_241951132.1 molybdopterin adenylyltransferase -
  RHN62_RS06980 - 1487464..1488393 (-) 930 WP_005725108.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20883.42 Da        Isoelectric Point: 7.8913

>NTDB_id=877578 RHN62_RS06955 WP_241951131.1 1483275..1483820(-) (pilF/pilF2) [Pasteurella multocida strain AKS2021-HT3]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAARYQQ
NLQHLTQFDPNRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=877578 RHN62_RS06955 WP_241951131.1 1483275..1483820(-) (pilF/pilF2) [Pasteurella multocida strain AKS2021-HT3]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGTGATGTATTAAA
TAATTATGGTACTTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTGGTTTGGTGTGCGTCTTTTGCCAAAGACGCTGCCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

50.568

97.238

0.492
  pilF Glaesserella parasuis strain SC1401

44.385

100

0.459