Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RHS39_RS13180 Genome accession   NZ_CP133900
Coordinates   2852191..2852805 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2847191..2857805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS13160 (RHS39_13160) - 2847476..2848393 (-) 918 WP_021822368.1 ABC transporter ATP-binding protein -
  RHS39_RS13165 (RHS39_13165) - 2848645..2850315 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  RHS39_RS13170 (RHS39_13170) can 2850599..2851267 (+) 669 WP_025789068.1 carbonate dehydratase -
  RHS39_RS13175 (RHS39_13175) hpt 2851342..2851872 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  RHS39_RS13180 (RHS39_13180) opaR 2852191..2852805 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  RHS39_RS13185 (RHS39_13185) lpdA 2852933..2854360 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  RHS39_RS13190 (RHS39_13190) aceF 2854629..2856524 (-) 1896 WP_025789069.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=877428 RHS39_RS13180 WP_005479697.1 2852191..2852805(+) (opaR) [Vibrio parahaemolyticus strain TW01]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=877428 RHS39_RS13180 WP_005479697.1 2852191..2852805(+) (opaR) [Vibrio parahaemolyticus strain TW01]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701