Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RHS39_RS10890 Genome accession   NZ_CP133900
Coordinates   2343388..2344791 (-) Length   467 a.a.
NCBI ID   WP_025787598.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2338388..2349791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS10855 (RHS39_10855) moaE 2338960..2339415 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  RHS39_RS10860 (RHS39_10860) moaD 2339417..2339674 (-) 258 WP_025571461.1 molybdopterin synthase sulfur carrier subunit -
  RHS39_RS10865 (RHS39_10865) moaC 2339671..2340150 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  RHS39_RS10870 (RHS39_10870) moaB 2340177..2340689 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  RHS39_RS10875 (RHS39_10875) moaA 2340792..2341781 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  RHS39_RS10880 (RHS39_10880) - 2342077..2342970 (+) 894 WP_005494500.1 YvcK family protein -
  RHS39_RS10885 (RHS39_10885) luxU 2343047..2343385 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  RHS39_RS10890 (RHS39_10890) luxO 2343388..2344791 (-) 1404 WP_025787598.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RHS39_RS10895 (RHS39_10895) uvrB 2345081..2347111 (-) 2031 WP_025787599.1 excinuclease ABC subunit UvrB -
  RHS39_RS10905 (RHS39_10905) rsxA 2348102..2348680 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  RHS39_RS10910 (RHS39_10910) rsxB 2348684..2349280 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52159.64 Da        Isoelectric Point: 6.0772

>NTDB_id=877426 RHS39_RS10890 WP_025787598.1 2343388..2344791(-) (luxO) [Vibrio parahaemolyticus strain TW01]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSNLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=877426 RHS39_RS10890 WP_025787598.1 2343388..2344791(-) (luxO) [Vibrio parahaemolyticus strain TW01]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAACA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAACCTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368