Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AABJ48_RS10205 | Genome accession | NZ_AP027595 |
| Coordinates | 2075956..2076396 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain LR-64-2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2070956..2081396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ48_RS10185 (VEE33_19230) | aroP | 2071954..2073327 (+) | 1374 | WP_000969915.1 | aromatic amino acid transporter AroP | - |
| AABJ48_RS10190 (VEE33_19240) | ampE | 2073370..2074224 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| AABJ48_RS10195 (VEE33_19250) | ampD | 2074221..2074772 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AABJ48_RS10200 (VEE33_19260) | nadC | 2074860..2075753 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AABJ48_RS10205 (VEE33_19270) | pilA | 2075956..2076396 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AABJ48_RS10210 (VEE33_19280) | pilB | 2076406..2077791 (+) | 1386 | WP_001025145.1 | type II secretion system protein GspE | Machinery gene |
| AABJ48_RS10215 (VEE33_19290) | hofC | 2077781..2078983 (+) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| AABJ48_RS10220 (VEE33_19300) | guaC | 2079018..2080061 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| AABJ48_RS10225 | - | 2080217..2080261 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AABJ48_RS10230 (VEE33_19310) | coaE | 2080286..2080906 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=87740 AABJ48_RS10205 WP_000360904.1 2075956..2076396(+) (pilA) [Escherichia coli strain LR-64-2]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=87740 AABJ48_RS10205 WP_000360904.1 2075956..2076396(+) (pilA) [Escherichia coli strain LR-64-2]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |