Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RHS38_RS05325 Genome accession   NZ_CP133891
Coordinates   1123617..1125020 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118617..1130020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS05305 (RHS38_05305) rsxB 1119129..1119725 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  RHS38_RS05310 (RHS38_05310) rsxA 1119729..1120307 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  RHS38_RS05320 (RHS38_05320) uvrB 1121297..1123327 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  RHS38_RS05325 (RHS38_05325) luxO 1123617..1125020 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RHS38_RS05330 (RHS38_05330) luxU 1125023..1125361 (+) 339 WP_015297057.1 quorum-sensing phosphorelay protein LuxU -
  RHS38_RS05335 (RHS38_05335) - 1125438..1126331 (-) 894 WP_005494500.1 YvcK family protein -
  RHS38_RS05340 (RHS38_05340) moaA 1126627..1127616 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  RHS38_RS05345 (RHS38_05345) moaB 1127719..1128231 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  RHS38_RS05350 (RHS38_05350) moaC 1128258..1128737 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  RHS38_RS05355 (RHS38_05355) moaD 1128734..1128991 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  RHS38_RS05360 (RHS38_05360) moaE 1128993..1129448 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=877388 RHS38_RS05325 WP_005461534.1 1123617..1125020(+) (luxO) [Vibrio parahaemolyticus strain M0904]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=877388 RHS38_RS05325 WP_005461534.1 1123617..1125020(+) (luxO) [Vibrio parahaemolyticus strain M0904]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCACGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTCCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTCAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGCTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACCGTTTCAGAGATCATGCCACTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368