Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   RHS38_RS02980 Genome accession   NZ_CP133891
Coordinates   611456..612070 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain M0904     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 606456..617070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS38_RS02970 (RHS38_02970) aceF 607746..609632 (+) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  RHS38_RS02975 (RHS38_02975) lpdA 609901..611328 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  RHS38_RS02980 (RHS38_02980) opaR 611456..612070 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  RHS38_RS02985 (RHS38_02985) hpt 612389..612919 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  RHS38_RS02990 (RHS38_02990) can 612993..613661 (-) 669 WP_005462578.1 carbonate dehydratase -
  RHS38_RS02995 (RHS38_02995) - 613945..615615 (+) 1671 WP_085610071.1 SulP family inorganic anion transporter -
  RHS38_RS03000 (RHS38_03000) - 615868..616785 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=877386 RHS38_RS02980 WP_005479697.1 611456..612070(-) (opaR) [Vibrio parahaemolyticus strain M0904]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=877386 RHS38_RS02980 WP_005479697.1 611456..612070(-) (opaR) [Vibrio parahaemolyticus strain M0904]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGCATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701