NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	RHO07_RS06045	Genome accession	NZ_CP133808
Coordinates	1295067..1295501 (-)	Length	144 a.a.
NCBI ID	WP_005741096.1	Uniprot ID	-
Organism	Pasteurella multocida strain W16-1607.1
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1290067..1300501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RHO07_RS06015 (RHO07_06015)	-	1290631..1290900 (-)	270	WP_005722568.1	GNAT family N-acetyltransferase	-
RHO07_RS06020 (RHO07_06020)	yacG	1290900..1291103 (-)	204	WP_005719879.1	DNA gyrase inhibitor YacG	-
RHO07_RS06025 (RHO07_06025)	coaE	1291114..1291734 (-)	621	WP_010906475.1	dephospho-CoA kinase	-
RHO07_RS06030 (RHO07_06030)	-	1291749..1292471 (-)	723	WP_010906474.1	A24 family peptidase	-
RHO07_RS06035 (RHO07_06035)	-	1292471..1293682 (-)	1212	WP_005722560.1	type II secretion system F family protein	-
RHO07_RS06040 (RHO07_06040)	pilB	1293682..1295067 (-)	1386	WP_010906472.1	GspE/PulE family protein	Machinery gene
RHO07_RS06045 (RHO07_06045)	pilA	1295067..1295501 (-)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
RHO07_RS06050 (RHO07_06050)	ampD	1295661..1296227 (+)	567	WP_005751074.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
RHO07_RS06055 (RHO07_06055)	rppH	1296812..1297408 (+)	597	WP_005722417.1	RNA pyrophosphohydrolase	-
RHO07_RS06060 (RHO07_06060)	-	1297411..1298205 (+)	795	WP_005722415.1	sulfite exporter TauE/SafE family protein	-
RHO07_RS06065 (RHO07_06065)	lgt	1298215..1299027 (+)	813	WP_010906471.1	prolipoprotein diacylglyceryl transferase	-
RHO07_RS06070 (RHO07_06070)	-	1299024..1299875 (+)	852	WP_010906470.1	thymidylate synthase	-
RHO07_RS06075 (RHO07_06075)	tadA	1299890..1300390 (+)	501	WP_005755875.1	tRNA adenosine(34) deaminase TadA	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15058.48 Da Isoelectric Point: 9.1281

                                >NTDB_id=876956 RHO07_RS06045 WP_005741096.1 1295067..1295501(-) (pilA) [Pasteurella multocida strain W16-1607.1]

MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR

ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide

Download Length: 435 bp

                                >NTDB_id=876956 RHO07_RS06045 WP_005741096.1 1295067..1295501(-) (pilA) [Pasteurella multocida strain W16-1607.1]

ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT

TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC

CTTATCGTGCTGAGGTAGAACTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT

GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACAGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG

CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC

AATCTGACATTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	63.194	100	0.632
pilA	Haemophilus influenzae Rd KW20	61.111	100	0.611
pilA	Glaesserella parasuis strain SC1401	52.349	100	0.542
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.806	100	0.368
pilA	Vibrio cholerae strain A1552	36.806	100	0.368
pilA	Vibrio cholerae C6706	36.806	100	0.368

Detailed information NTG0876956