Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   RF668_RS04030 Genome accession   NZ_CP133787
Coordinates   792944..793435 (+) Length   163 a.a.
NCBI ID   WP_043736742.1    Uniprot ID   A0AAX4ACX2
Organism   Lactococcus cremoris strain KCKM 0438     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 787944..798435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF668_RS04015 (RF668_04015) rpsB 788825..789592 (+) 768 WP_011836067.1 30S ribosomal protein S2 -
  RF668_RS04020 (RF668_04020) tsf 789714..790742 (+) 1029 WP_011677206.1 translation elongation factor Ts -
  RF668_RS04025 (RF668_04025) ezrA 790948..792678 (+) 1731 WP_011836066.1 septation ring formation regulator EzrA -
  RF668_RS04030 (RF668_04030) comX 792944..793435 (+) 492 WP_043736742.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19714.45 Da        Isoelectric Point: 6.0263

>NTDB_id=876863 RF668_RS04030 WP_043736742.1 792944..793435(+) (comX) [Lactococcus cremoris strain KCKM 0438]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQRLIDELRHSYA
QKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMERYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=876863 RF668_RS04030 WP_043736742.1 792944..793435(+) (comX) [Lactococcus cremoris strain KCKM 0438]
ATGACATATTACTTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACGTTTGATTGATGAACTACGCCATAGCTACGCC
CAAAAACGGCTTCATGACCATTTTGTAGGTCTGGACATTTATGAATGTTCAGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAATCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAACGCTATCGGCTACGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.773

100

0.988
  comX Lactococcus lactis subsp. lactis strain DGCC12653

75.46

100

0.755