Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RF667_RS11150 Genome accession   NZ_CP133786
Coordinates   2257574..2258170 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain KCKM 0245     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2252574..2263170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF667_RS11130 (RF667_11130) gyrA 2253075..2255696 (+) 2622 WP_194959058.1 DNA gyrase subunit A -
  RF667_RS11135 (RF667_11135) deoC 2255801..2256505 (-) 705 WP_016380932.1 deoxyribose-phosphate aldolase -
  RF667_RS11140 (RF667_11140) ssb 2256688..2257119 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  RF667_RS11145 (RF667_11145) rpsF 2257247..2257543 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  RF667_RS11150 (RF667_11150) ssb 2257574..2258170 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  RF667_RS11155 (RF667_11155) rpsR 2258257..2258493 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  RF667_RS11160 (RF667_11160) - 2258935..2260413 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  RF667_RS11165 (RF667_11165) cydB 2260406..2261425 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  RF667_RS11170 (RF667_11170) - 2261452..2261646 (+) 195 WP_003568474.1 hypothetical protein -
  RF667_RS11175 (RF667_11175) - 2261719..2262312 (-) 594 WP_003572821.1 TMEM175 family protein -
  RF667_RS11180 (RF667_11180) - 2262709..2263104 (-) 396 WP_003659007.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=876844 RF667_RS11150 WP_003568462.1 2257574..2258170(+) (ssb) [Lacticaseibacillus paracasei strain KCKM 0245]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=876844 RF667_RS11150 WP_003568462.1 2257574..2258170(+) (ssb) [Lacticaseibacillus paracasei strain KCKM 0245]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485