Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RHM55_RS11115 Genome accession   NZ_CP133784
Coordinates   2374919..2376508 (+) Length   529 a.a.
NCBI ID   WP_322181986.1    Uniprot ID   -
Organism   Pseudomonas sp. MH9.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2369919..2381508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM55_RS11095 (RHM55_11095) pgeF 2371691..2372413 (-) 723 WP_322182868.1 peptidoglycan editing factor PgeF -
  RHM55_RS11100 (RHM55_11100) rluD 2372422..2373384 (-) 963 WP_219062582.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RHM55_RS11105 (RHM55_11105) - 2373534..2374550 (+) 1017 WP_322181984.1 outer membrane protein assembly factor BamD -
  RHM55_RS11110 (RHM55_11110) - 2374669..2374929 (+) 261 WP_322182870.1 PP0621 family protein -
  RHM55_RS11115 (RHM55_11115) pilS 2374919..2376508 (+) 1590 WP_322181986.1 sensor histidine kinase Regulator
  RHM55_RS11120 (RHM55_11120) pilR 2376511..2377854 (+) 1344 WP_322181988.1 sigma-54 dependent transcriptional regulator Regulator
  RHM55_RS11125 (RHM55_11125) thiO 2378008..2379111 (-) 1104 WP_322181990.1 glycine oxidase ThiO -
  RHM55_RS11130 (RHM55_11130) - 2379139..2379561 (-) 423 WP_322181993.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58561.78 Da        Isoelectric Point: 6.7762

>NTDB_id=876776 RHM55_RS11115 WP_322181986.1 2374919..2376508(+) (pilS) [Pseudomonas sp. MH9.2]
MTAETLSLSGNQAQRILRLYHLYRLVIGITLVLMISSNLDDDLLELANPILFRTGCWLYLVFNILVVVLLDRPNNAVQTF
SLALADVVMLSALFYAGGGAPSGIGNLLIASVAISNILLRGRTGLLIAAVAAIGIIYLTFYLSFNRPSAYNHYLQAGSLG
AMCFAAALLVQALTHRLHLSESLAKERAADVDNLEELNALILQRMRTGILVLDAQRKVLLANHGALTLLGQEHLIGKTID
DYCPPLVDRLQQWQINPMLRPQSVATSLGPVLQPSFIALNRDERRHTLIFLEDLSQISQQAQQLKLVALGRLTAGIAHEI
RNPLGAISHAAQLLKESEDLTAPDLRLGQIIHDQSRRMNLVIENVLQLSRRRQAEPQQLDVKRWLEPFLSDFRSAATTNQ
QLHVDIGIGTLTTRMDPEQLTQVLTNLLQNALRYSAKVNEQAQVWLKLCHDPISDLPILEVLDDGPGVASEHLTKIFEPF
FTTENKGTGLGLYISRELCESNQAHLDYSPREGGGSCFRITFAHPLKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=876776 RHM55_RS11115 WP_322181986.1 2374919..2376508(+) (pilS) [Pseudomonas sp. MH9.2]
GTGACCGCTGAGACACTCTCACTGAGCGGCAATCAGGCCCAGCGTATCCTGCGGCTTTATCACCTTTATCGTTTGGTCAT
CGGCATCACGCTGGTCCTGATGATCTCCAGCAATCTGGATGATGACCTGCTGGAGCTGGCCAACCCGATCCTGTTCAGGA
CAGGTTGCTGGCTGTATCTGGTTTTCAATATCCTGGTCGTCGTGCTGCTGGACAGACCGAACAATGCTGTACAGACATTC
AGCTTGGCGCTGGCCGATGTCGTGATGCTTTCGGCGTTGTTTTACGCAGGCGGTGGCGCACCCAGCGGCATCGGCAACCT
GCTGATTGCATCGGTCGCCATCAGCAACATATTGCTGCGAGGGCGCACTGGGTTGTTGATTGCCGCGGTTGCAGCCATCG
GCATCATTTACCTGACCTTCTATCTCAGCTTCAATCGACCGTCGGCGTACAACCACTATCTCCAGGCTGGCTCGCTGGGC
GCCATGTGCTTTGCCGCCGCGTTATTGGTACAGGCATTGACCCATCGCCTGCACCTTAGCGAGTCGCTGGCAAAAGAACG
CGCGGCAGATGTCGACAACCTCGAAGAACTCAACGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
CCCAACGCAAGGTGCTGCTGGCCAATCACGGCGCCCTGACCCTGCTGGGCCAGGAACACCTGATCGGCAAAACCATCGAC
GACTATTGCCCACCGCTGGTCGACCGGCTGCAGCAATGGCAGATCAACCCGATGTTGCGTCCGCAGAGTGTGGCGACGTC
CCTCGGCCCGGTGCTGCAACCAAGCTTCATCGCCCTCAATCGCGACGAACGGCGTCACACCCTGATCTTTCTCGAGGACC
TGTCGCAGATATCCCAACAGGCCCAGCAACTCAAGCTCGTCGCATTAGGCCGCCTGACTGCCGGGATCGCCCACGAAATT
CGTAATCCACTGGGCGCCATCAGCCATGCCGCCCAACTGCTCAAAGAATCAGAGGACCTGACGGCGCCTGATCTGCGCCT
GGGTCAGATCATCCACGATCAATCCCGGCGGATGAATCTGGTGATTGAAAACGTTCTGCAACTGTCTCGCCGACGTCAGG
CCGAACCGCAGCAGCTCGATGTCAAACGCTGGCTGGAGCCGTTCCTCAGCGATTTTCGCAGTGCCGCCACGACCAACCAG
CAGTTGCATGTCGACATTGGCATTGGGACCCTGACGACGCGCATGGACCCCGAGCAACTGACGCAGGTGCTGACCAACTT
GCTGCAGAACGCATTACGGTATAGCGCCAAGGTCAATGAACAGGCGCAGGTCTGGCTAAAACTGTGTCACGATCCGATCA
GCGACTTGCCGATCCTGGAAGTGCTCGATGACGGCCCAGGCGTGGCCAGCGAGCATCTGACAAAGATTTTCGAACCCTTC
TTCACCACGGAAAACAAAGGCACCGGGCTGGGCCTTTATATTTCCCGCGAGCTGTGCGAAAGCAATCAAGCACATCTGGA
TTACAGTCCCCGGGAAGGTGGCGGGAGCTGTTTCCGCATCACCTTCGCCCATCCGCTCAAACTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.962

100

0.641