Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RHM68_RS23835 Genome accession   NZ_CP133782
Coordinates   5249790..5250194 (-) Length   134 a.a.
NCBI ID   WP_322223924.1    Uniprot ID   -
Organism   Pseudomonas sp. DC1.2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5244790..5255194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS23820 (RHM68_23820) - 5246628..5248688 (-) 2061 WP_416195214.1 methyl-accepting chemotaxis protein -
  RHM68_RS23825 (RHM68_23825) - 5248811..5249353 (-) 543 WP_322219447.1 chemotaxis protein CheW -
  RHM68_RS23830 (RHM68_23830) pilH 5249364..5249729 (-) 366 WP_008068134.1 twitching motility response regulator PilH -
  RHM68_RS23835 (RHM68_23835) pilG 5249790..5250194 (-) 405 WP_322223924.1 twitching motility response regulator PilG Regulator
  RHM68_RS23840 (RHM68_23840) gshB 5250428..5251381 (+) 954 WP_322219448.1 glutathione synthase -
  RHM68_RS23845 (RHM68_23845) - 5251517..5252416 (+) 900 WP_322219449.1 energy transducer TonB -
  RHM68_RS23850 (RHM68_23850) - 5252549..5253121 (+) 573 WP_322219450.1 YqgE/AlgH family protein -
  RHM68_RS23855 (RHM68_23855) ruvX 5253121..5253558 (+) 438 WP_322219451.1 Holliday junction resolvase RuvX -
  RHM68_RS23860 (RHM68_23860) pyrR 5253649..5254155 (+) 507 WP_322219452.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14597.02 Da        Isoelectric Point: 7.8579

>NTDB_id=876729 RHM68_RS23835 WP_322223924.1 5249790..5250194(-) (pilG) [Pseudomonas sp. DC1.2]
MEQHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNQPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKDELLNAIKAHVPGFTAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=876729 RHM68_RS23835 WP_322223924.1 5249790..5250194(-) (pilG) [Pseudomonas sp. DC1.2]
ATGGAACAGCATTCCAGCGCCTTGAAGGTCATGGTAATCGACGATTCGAAGACGATTCGCCGCACTGCCGAAACGCTGTT
GAAAAACGTAGGCTGCGAAGTCATCACGGCCATCGATGGCTTCGATGCCCTGGCCAAGATTGCCGACAACCAACCCGGCA
TTATCTTCGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGTTAATCAAAAACAACAGTGCGTTCAAG
TCCACGCCAGTGATTATGCTGTCGTCCAAGGACGGACTGTTCGACAAGGCCAAGGGACGAATCGTCGGTTCCGATCAGTT
TCTGACCAAGCCTTTCAGCAAGGACGAACTGTTGAACGCGATCAAGGCCCATGTACCGGGCTTTACCGCCGTTTTGCCGC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

93.284

0.716
  vicR Streptococcus mutans UA159

41.88

87.313

0.366