Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM68_RS17970 Genome accession   NZ_CP133782
Coordinates   4002391..4004625 (-) Length   744 a.a.
NCBI ID   WP_322217343.1    Uniprot ID   A0AAU0TCV5
Organism   Pseudomonas sp. DC1.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3997391..4009625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS17935 (RHM68_17935) murB 3997771..3998790 (-) 1020 WP_322217320.1 UDP-N-acetylmuramate dehydrogenase -
  RHM68_RS17940 (RHM68_17940) - 3998787..3999251 (-) 465 WP_322217323.1 low molecular weight protein-tyrosine-phosphatase -
  RHM68_RS17945 (RHM68_17945) kdsB 3999251..4000015 (-) 765 WP_322217327.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM68_RS17950 (RHM68_17950) - 4000012..4000197 (-) 186 WP_007945752.1 Trm112 family protein -
  RHM68_RS17955 (RHM68_17955) lpxK 4000222..4001232 (-) 1011 WP_322217336.1 tetraacyldisaccharide 4'-kinase -
  RHM68_RS17960 (RHM68_17960) - 4001232..4001660 (-) 429 WP_322217339.1 biopolymer transporter ExbD -
  RHM68_RS17965 (RHM68_17965) exbB 4001657..4002292 (-) 636 WP_322217342.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM68_RS17970 (RHM68_17970) comA 4002391..4004625 (-) 2235 WP_322217343.1 ComEC/Rec2 family competence protein Machinery gene
  RHM68_RS17975 (RHM68_17975) - 4004761..4005276 (+) 516 WP_322217346.1 DUF2062 domain-containing protein -
  RHM68_RS17980 (RHM68_17980) - 4005345..4006124 (-) 780 WP_322217348.1 ABC transporter permease -
  RHM68_RS17985 (RHM68_17985) - 4006121..4007053 (-) 933 WP_322217351.1 ABC transporter ATP-binding protein -
  RHM68_RS17990 (RHM68_17990) - 4007187..4007810 (-) 624 WP_322217353.1 glutathione S-transferase -
  RHM68_RS17995 (RHM68_17995) - 4007854..4008513 (-) 660 WP_322217355.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81514.80 Da        Isoelectric Point: 10.3028

>NTDB_id=876718 RHM68_RS17970 WP_322217343.1 4002391..4004625(-) (comA) [Pseudomonas sp. DC1.2]
MRTGMVALGLGLLALCFLPALPPTGLWLLMPVVGLMLLPFRTYPLAFFLFGFSWACASAQWAVNDRLHADLDGETRWVEG
RVIGLPQNNDAVVRFELADARSRHGALPSLMRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRVGATG
TVKDGQRLSQAQWAWRDSVRQRLLSVDAQGRTGALAALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGMVYVL
IAGLARYGLWPKRLPWLPWACGLAFSAALGYGLLAGFETPVRRACVMIGLLLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLLPGFWLSFAAVALLIFTFSGRLGPWRWWQTWTRAQWLMALGLFPLLMVLGLPVSLSGPLANLLAVPWISLTVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDVLFKGLALMAGQLPAWMPVAIPIGVWGLGALGAFLLLLPSGTPLRPLGWPMLLLLV
FPPREPLPDGLAEVWQMDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPSLRKLGVQSIDLMLVSHADADHAGGA
RAVAKGLPVKRVLSGDPLALPIELHAKACESGEQWTWDGVRFELWQWSSATESNQKSCVLQIDAKGERLLLTGDIDTSAE
RALLDSPLAVSTDWLQAPHHGSRSSSSAALLNGLQPKAVLISRGHGNAFGHPHPMVMARYRKRGMRIYDSVEQGAIQLQL
GTFKPPRTLRQQRRFWRDTPAQNK

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=876718 RHM68_RS17970 WP_322217343.1 4002391..4004625(-) (comA) [Pseudomonas sp. DC1.2]
ATGCGCACAGGGATGGTCGCGCTGGGGCTGGGGCTTTTGGCGTTGTGTTTTTTACCGGCATTGCCGCCGACAGGTTTGTG
GCTATTGATGCCCGTAGTGGGTTTGATGCTGCTGCCATTCAGGACTTATCCGTTAGCGTTTTTTTTGTTCGGCTTCAGTT
GGGCGTGTGCGAGTGCGCAGTGGGCGGTGAATGATCGTTTGCACGCAGACCTCGATGGCGAGACTCGTTGGGTTGAGGGG
CGAGTCATCGGGTTGCCGCAGAACAATGACGCGGTGGTGCGTTTCGAACTGGCCGACGCTCGGTCACGCCATGGCGCGTT
GCCGTCGTTGATGCGTCTGGCGTGGTATGGCGGGCCGCCGGTCAACAGTGGCGAACGTTGGCGGTTGGCGGTGAAGTTGA
AGCGTCCGGCGGGACTGCTCAACCCCCATGCCTTCGATTATGACGCCTGGCTGCTGGCGCAACGCGTCGGTGCTACCGGG
ACGGTCAAGGATGGCCAGCGTTTGAGTCAAGCCCAATGGGCCTGGCGCGACAGCGTCCGGCAGCGTTTGCTCAGCGTCGA
TGCTCAGGGGCGAACAGGCGCACTGGCCGCGTTGGTGCTCGGGGACGGTGCGGGGCTAAGTCGCGAGGACTGGCAGGTGC
TGCAAGACACCGGGACGGTGCATCTGCTGGTTATTTCCGGACAGCACATCGGTTTGCTGGCCGGGATGGTTTACGTGCTA
ATTGCCGGGCTGGCTCGTTACGGCCTATGGCCGAAGCGTTTGCCCTGGCTCCCGTGGGCCTGTGGTCTGGCATTTTCGGC
GGCGCTCGGTTACGGCCTGTTGGCCGGTTTCGAGACCCCGGTACGACGAGCCTGCGTGATGATCGGCCTGTTGCTGTTGT
GGCGTTTGCGGTTTCGGCACCTGGGCGCCTGGTGGCCGTTGTTGCTGGCGCTCAATGGCGTGTTGCTGCTGGATCCGTTG
GCGAGCCTGCTGCCGGGTTTCTGGTTGTCCTTCGCGGCGGTGGCCCTGCTGATTTTTACCTTCAGCGGTCGGCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCGCAATGGCTGATGGCCCTCGGCTTGTTTCCGCTGTTAATGGTGCTGGGGC
TTCCGGTCAGCCTCAGCGGTCCGTTGGCTAATCTGCTGGCGGTGCCCTGGATCAGTCTTACGGTACTGCCGCCCGCTTTG
TTGGGGACGTTGCTGCTACCCATACCTTATGTCGGGGAAGGATTGCTGTGGTTGGCCGGGGGGCTGATCGATGTTCTGTT
CAAAGGCCTCGCGTTAATGGCCGGTCAATTGCCTGCGTGGATGCCTGTGGCGATTCCTATTGGGGTGTGGGGGCTGGGTG
CGCTGGGGGCCTTTCTTCTATTGCTCCCCAGTGGTACGCCGTTGCGCCCACTGGGTTGGCCGATGTTATTGCTACTGGTG
TTCCCGCCCAGGGAACCGTTACCGGATGGATTGGCCGAGGTATGGCAGATGGACGTTGGCCAGGGGCTAGCGATTCTGGT
GCGCACACGGCATCACACGCTGCTGTATGACACCGGCCCGCGTTTTGGTGATTTTGATCTGGGTGAGCGTGTCGTGTTGC
CGTCTTTGCGCAAGCTGGGAGTGCAATCAATCGATCTGATGTTAGTCAGTCACGCCGATGCCGATCACGCTGGCGGCGCG
CGGGCGGTCGCCAAGGGGCTGCCGGTGAAGCGAGTGCTCAGCGGTGATCCCCTGGCGTTGCCCATCGAGTTACACGCCAA
GGCTTGCGAGAGTGGTGAGCAGTGGACCTGGGATGGGGTGAGGTTTGAACTTTGGCAATGGTCTTCAGCCACCGAAAGTA
ATCAGAAATCCTGTGTGCTACAGATCGATGCCAAGGGTGAGCGATTGTTATTGACCGGCGACATCGATACCAGCGCCGAA
CGCGCGCTGCTGGACAGTCCGCTGGCAGTCAGCACCGACTGGTTGCAGGCGCCGCACCACGGCAGTCGCAGTTCATCATC
CGCCGCGCTGCTGAACGGGCTCCAGCCCAAAGCAGTGCTGATTTCCCGAGGTCATGGAAATGCCTTCGGGCATCCCCATC
CGATGGTTATGGCGCGCTATCGCAAGCGAGGCATGCGCATCTACGACAGCGTCGAGCAGGGCGCCATCCAACTGCAATTG
GGGACGTTCAAACCGCCCCGGACCCTGCGTCAACAACGACGTTTCTGGCGCGATACTCCTGCGCAAAACAAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(7-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.778

96.774

0.608