Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM68_RS17965 Genome accession   NZ_CP133782
Coordinates   4001657..4002292 (-) Length   211 a.a.
NCBI ID   WP_322217342.1    Uniprot ID   -
Organism   Pseudomonas sp. DC1.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3996657..4007292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM68_RS17930 (RHM68_17930) - 3997059..3997529 (-) 471 WP_322217319.1 (2Fe-2S)-binding protein -
  RHM68_RS17935 (RHM68_17935) murB 3997771..3998790 (-) 1020 WP_322217320.1 UDP-N-acetylmuramate dehydrogenase -
  RHM68_RS17940 (RHM68_17940) - 3998787..3999251 (-) 465 WP_322217323.1 low molecular weight protein-tyrosine-phosphatase -
  RHM68_RS17945 (RHM68_17945) kdsB 3999251..4000015 (-) 765 WP_322217327.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM68_RS17950 (RHM68_17950) - 4000012..4000197 (-) 186 WP_007945752.1 Trm112 family protein -
  RHM68_RS17955 (RHM68_17955) lpxK 4000222..4001232 (-) 1011 WP_322217336.1 tetraacyldisaccharide 4'-kinase -
  RHM68_RS17960 (RHM68_17960) - 4001232..4001660 (-) 429 WP_322217339.1 biopolymer transporter ExbD -
  RHM68_RS17965 (RHM68_17965) exbB 4001657..4002292 (-) 636 WP_322217342.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM68_RS17970 (RHM68_17970) comA 4002391..4004625 (-) 2235 WP_322217343.1 ComEC/Rec2 family competence protein Machinery gene
  RHM68_RS17975 (RHM68_17975) - 4004761..4005276 (+) 516 WP_322217346.1 DUF2062 domain-containing protein -
  RHM68_RS17980 (RHM68_17980) - 4005345..4006124 (-) 780 WP_322217348.1 ABC transporter permease -
  RHM68_RS17985 (RHM68_17985) - 4006121..4007053 (-) 933 WP_322217351.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22885.11 Da        Isoelectric Point: 7.3615

>NTDB_id=876717 RHM68_RS17965 WP_322217342.1 4001657..4002292(-) (exbB) [Pseudomonas sp. DC1.2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPAHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876717 RHM68_RS17965 WP_322217342.1 4001657..4002292(-) (exbB) [Pseudomonas sp. DC1.2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAACGTCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCGGCGCACTTGCTCGGGCAAGTGTGGGTCTGGATCAAGGACA
AACAACTTAATAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGCGAGATCCTGGCTGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATTATGAAGGAGTGCATCGAAGAGGCCGCTGCCCGCGTGATTCACGAACTTGAGCGCTATAT
CAACGCCTTGGGCACTATTGCCGCCATGGCCCCGTTGCTCGGTTTGCTGGGGACGGTGCTGGGCATGATCGATATTTTCA
GTGCATTCATGGGCTCGGGCATGACCACCAATGCCGCGGTGCTCGCGGGGGGTATTTCCAAGGCGCTGATTACCACCGCT
GCGGGCCTGATGGTGGGTATTCCGTCGGTGTTTTTTCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGTAT
GGAGCAGGAAGCGATCAAACTGGTCGAGGTGGTGCAGGGTGACCGTGACGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858