Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   WLQ80_RS10755 Genome accession   NZ_CP150019
Coordinates   1932157..1932813 (+) Length   218 a.a.
NCBI ID   WP_199371404.1    Uniprot ID   -
Organism   Escherichia coli strain 2024CK-00188     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927157..1937813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLQ80_RS10720 (WLQ80_10675) dcyD 1928037..1929023 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  WLQ80_RS10725 (WLQ80_10680) tcyL 1929038..1929706 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  WLQ80_RS10730 (WLQ80_10685) tcyN 1929703..1930455 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  WLQ80_RS10735 (WLQ80_10690) sdiA 1930685..1931407 (+) 723 WP_001154265.1 transcriptional regulator SdiA -
  WLQ80_RS10740 (WLQ80_10695) yecF 1931474..1931698 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  WLQ80_RS10745 (WLQ80_10700) yecU 1931685..1931861 (-) 177 WP_000590344.1 protein YecU -
  WLQ80_RS10750 (WLQ80_10705) - 1931899..1932015 (-) 117 WP_001302039.1 hypothetical protein -
  WLQ80_RS10755 (WLQ80_10710) letA 1932157..1932813 (+) 657 WP_199371404.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  WLQ80_RS10760 (WLQ80_10715) uvrC 1932810..1934642 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  WLQ80_RS10765 (WLQ80_10720) pgsA 1934699..1935247 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WLQ80_RS10785 (WLQ80_10740) yecA 1935897..1936562 (+) 666 WP_000847880.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23890.68 Da        Isoelectric Point: 6.9614

>NTDB_id=876682 WLQ80_RS10755 WP_199371404.1 1932157..1932813(+) (letA) [Escherichia coli strain 2024CK-00188]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEVTRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=876682 WLQ80_RS10755 WP_199371404.1 1932157..1932813(+) (letA) [Escherichia coli strain 2024CK-00188]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTTGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGTGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486