Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RHM56_RS04395 Genome accession   NZ_CP133778
Coordinates   965155..965790 (+) Length   211 a.a.
NCBI ID   WP_322241701.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960155..970790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS04375 (RHM56_04375) - 960330..961262 (+) 933 WP_322238949.1 ABC transporter ATP-binding protein -
  RHM56_RS04380 (RHM56_04380) - 961259..962038 (+) 780 WP_322238951.1 ABC transporter permease -
  RHM56_RS04385 (RHM56_04385) - 962140..962655 (-) 516 WP_322238953.1 DUF2062 domain-containing protein -
  RHM56_RS04390 (RHM56_04390) comA 962790..965006 (+) 2217 WP_322238956.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM56_RS04395 (RHM56_04395) exbB 965155..965790 (+) 636 WP_322241701.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM56_RS04400 (RHM56_04400) - 965787..966215 (+) 429 WP_322238958.1 biopolymer transporter ExbD -
  RHM56_RS04405 (RHM56_04405) lpxK 966215..967210 (+) 996 WP_322238960.1 tetraacyldisaccharide 4'-kinase -
  RHM56_RS04410 (RHM56_04410) - 967237..967422 (+) 186 WP_003442540.1 Trm112 family protein -
  RHM56_RS04415 (RHM56_04415) kdsB 967419..968183 (+) 765 WP_322238962.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM56_RS04420 (RHM56_04420) - 968183..968647 (+) 465 WP_322238964.1 low molecular weight protein-tyrosine-phosphatase -
  RHM56_RS04425 (RHM56_04425) murB 968644..969663 (+) 1020 WP_322238966.1 UDP-N-acetylmuramate dehydrogenase -
  RHM56_RS04430 (RHM56_04430) - 969708..970319 (+) 612 WP_322238969.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22895.23 Da        Isoelectric Point: 7.3613

>NTDB_id=876668 RHM56_RS04395 WP_322241701.1 965155..965790(+) (exbB) [Pseudomonas sp. CCC3.1]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKLLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=876668 RHM56_RS04395 WP_322241701.1 965155..965790(+) (exbB) [Pseudomonas sp. CCC3.1]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTGTGGACCCTTCGCGCCAGTCGCGTGACCCCGCCGCACCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGGACAAAGAAAAACTCAAGCTTCTGCGCGCGGATTCTCCGCTGGGTGAAATCCTGGCCGCTGGTCTGGCGAAT
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTACCT
CAATGCCTTGGGCACGATTGCTGCGATGGCGCCCTTGCTGGGCCTGTTGGGCACTGTATTGGGCATGATCGACATTTTCA
GCGCCTTTATGGGCACGGGCATGACCACGAATGCGGCGGTGCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACTGCG
GCAGGCTTGATGGTGGGGATCCCGGCCGTGTTCTTCCATCGCTTCTTGCAGCGTCGAGTTGACGAGCTGGTGGTCGGCAT
GGAGCAAGAAGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGCGAAGTCGACATGGTCGGGAGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867