Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHM56_RS04390 Genome accession   NZ_CP133778
Coordinates   962790..965006 (+) Length   738 a.a.
NCBI ID   WP_322238956.1    Uniprot ID   -
Organism   Pseudomonas sp. CCC3.1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 957790..970006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM56_RS04370 (RHM56_04370) - 959560..960183 (+) 624 WP_322238947.1 glutathione S-transferase -
  RHM56_RS04375 (RHM56_04375) - 960330..961262 (+) 933 WP_322238949.1 ABC transporter ATP-binding protein -
  RHM56_RS04380 (RHM56_04380) - 961259..962038 (+) 780 WP_322238951.1 ABC transporter permease -
  RHM56_RS04385 (RHM56_04385) - 962140..962655 (-) 516 WP_322238953.1 DUF2062 domain-containing protein -
  RHM56_RS04390 (RHM56_04390) comA 962790..965006 (+) 2217 WP_322238956.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RHM56_RS04395 (RHM56_04395) exbB 965155..965790 (+) 636 WP_322241701.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RHM56_RS04400 (RHM56_04400) - 965787..966215 (+) 429 WP_322238958.1 biopolymer transporter ExbD -
  RHM56_RS04405 (RHM56_04405) lpxK 966215..967210 (+) 996 WP_322238960.1 tetraacyldisaccharide 4'-kinase -
  RHM56_RS04410 (RHM56_04410) - 967237..967422 (+) 186 WP_003442540.1 Trm112 family protein -
  RHM56_RS04415 (RHM56_04415) kdsB 967419..968183 (+) 765 WP_322238962.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RHM56_RS04420 (RHM56_04420) - 968183..968647 (+) 465 WP_322238964.1 low molecular weight protein-tyrosine-phosphatase -
  RHM56_RS04425 (RHM56_04425) murB 968644..969663 (+) 1020 WP_322238966.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80202.40 Da        Isoelectric Point: 10.1140

>NTDB_id=876667 RHM56_RS04390 WP_322238956.1 962790..965006(+) (comA) [Pseudomonas sp. CCC3.1]
MHTRMLALASGLIALRYLPVIPAVEWVLLLLGAGLLLLGLRMYPPGLFLLGLGWACVSGQWALDDRLAPALDGRTLWVEG
RVVGLPQRSDVSVRFELQGAQSRHAELPSTLRLSWYGGPPVNSGERWRLAVNLKRPKGLLNPQGFDFQAWLLAQRVGATG
TIKEGQLLAPARHAWRDGLRQQLLRSDANGRAPWLAALVMGDGSGLSREDWTLLQATGTVHLLVISGQHIGLFFGLIYGL
IALLARYGLWPRRLPWLPWACGLAFAGALGYGLLAGFEVPVQRACVMLGLVLIWRLRFRHLGAWLPFLLALNAVLIAEPL
ASLMPGFWLSFAAVAVLILTFGSRLGPWGWKAVWLRPQGLIAVGLFPMLWILGLPISLSGPLANLLAVPWISLAVLPTAL
LGTLLLPVPWLGDGLLWVAGGLLNGLIHGLMLLADTVSPWSPATVPLGIWLLCAAGAVILLLPAGMVLRPLGWPLVLLAV
FAAREQIPHGQVEVLQLDVGQGLAMVLRTRHHTLLYDAGPKVRDFDQGERVVVPALRSMGIGTLDMMLLSHADSDHAGGA
LAVQRAMKVMRVVSGDVPGLPESLKAQPCTSEDSWEWDGVRFSLWQWPGATDGNQKSCVLHVEASDERLLLTGDIDIQAE
RAFMASPLAVPTQWLQAPHHGSRTSSSAVFLKKLSPAAVLISRGHGNTFGHPHPQVMARYKALGMTILDSAEQGAIRFRL
GAFGVAESQRDQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=876667 RHM56_RS04390 WP_322238956.1 962790..965006(+) (comA) [Pseudomonas sp. CCC3.1]
ATGCACACAAGGATGTTGGCGCTGGCGTCGGGCTTGATTGCGTTGCGCTATTTACCGGTGATACCCGCCGTTGAGTGGGT
GCTGCTGTTGCTGGGAGCAGGACTGCTGCTGTTGGGATTGCGTATGTATCCGCCCGGATTGTTTCTGTTGGGATTGGGCT
GGGCCTGTGTTTCGGGGCAGTGGGCGCTTGATGATCGTTTGGCACCCGCGCTCGATGGTCGAACGCTGTGGGTCGAAGGG
CGGGTTGTCGGTCTGCCGCAGCGTTCAGATGTGTCCGTGCGCTTTGAGTTGCAAGGCGCGCAATCACGGCATGCCGAACT
GCCCTCGACGCTGCGTCTGAGCTGGTACGGCGGGCCGCCGGTCAACAGTGGTGAGCGCTGGCGACTGGCGGTCAATCTCA
AACGTCCCAAAGGGTTGTTGAACCCTCAAGGTTTTGATTTTCAGGCCTGGTTATTGGCGCAACGGGTTGGCGCCACAGGC
ACCATCAAAGAGGGGCAGCTATTGGCGCCAGCCCGTCACGCCTGGCGTGACGGCTTGCGTCAACAGTTGCTGCGCAGCGA
TGCCAATGGCCGGGCACCGTGGCTGGCGGCGCTGGTCATGGGCGACGGCTCGGGCTTGAGTCGCGAGGACTGGACGCTGC
TGCAAGCGACCGGCACGGTGCATTTACTGGTGATATCGGGGCAGCACATTGGTCTGTTTTTCGGGTTGATCTACGGCCTG
ATCGCATTGCTGGCGCGTTATGGTCTGTGGCCGCGGCGACTGCCGTGGCTGCCTTGGGCCTGTGGTCTGGCCTTCGCAGG
CGCGCTGGGCTACGGCTTGCTCGCCGGTTTTGAAGTGCCGGTTCAGCGCGCCTGCGTGATGCTCGGGCTGGTGCTTATAT
GGCGTTTGCGGTTTCGGCACTTGGGCGCTTGGCTGCCTTTTTTACTCGCGCTTAATGCTGTGTTGATCGCTGAGCCACTG
GCGAGCTTGATGCCTGGGTTCTGGTTGTCATTCGCGGCGGTCGCGGTGCTGATATTGACCTTTGGTTCGCGCCTGGGCCC
ATGGGGTTGGAAGGCTGTGTGGCTTCGGCCTCAAGGCTTGATCGCTGTGGGACTGTTCCCGATGTTGTGGATTCTGGGGT
TGCCCATCAGCCTGAGCGGGCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGCCTGGCGGTACTGCCCACAGCCTTG
TTGGGTACCTTATTGTTGCCGGTGCCTTGGCTGGGTGACGGGTTGCTTTGGGTGGCGGGCGGATTACTCAATGGGCTCAT
CCACGGCCTGATGTTGCTGGCTGACACGGTCTCGCCCTGGTCACCCGCAACGGTGCCGCTTGGCATATGGCTGCTGTGTG
CGGCGGGCGCCGTGATCCTGCTGCTGCCCGCCGGGATGGTGCTCAGGCCGTTGGGTTGGCCATTGGTGTTGCTGGCTGTA
TTTGCCGCGCGTGAGCAGATCCCTCATGGCCAGGTCGAGGTGTTGCAACTGGATGTCGGGCAGGGCCTGGCGATGGTATT
GCGCACGCGGCATCACACGCTGCTGTATGACGCGGGTCCTAAAGTCCGGGACTTTGATCAAGGCGAGCGGGTGGTGGTCC
CGGCGCTGCGATCCATGGGCATTGGCACGCTGGATATGATGCTGCTCAGCCATGCCGACTCGGATCACGCGGGCGGCGCG
CTGGCGGTGCAGCGGGCGATGAAGGTGATGCGGGTGGTGAGCGGCGATGTGCCCGGACTGCCTGAGTCGCTGAAGGCGCA
ACCTTGTACGAGCGAGGACAGTTGGGAGTGGGACGGGGTGAGGTTTTCGTTGTGGCAATGGCCCGGTGCGACCGATGGCA
ATCAAAAATCCTGCGTACTGCACGTTGAAGCCAGCGACGAACGGTTGCTGTTGACCGGCGATATAGACATCCAGGCTGAG
CGGGCCTTTATGGCCAGCCCGCTGGCGGTGCCCACGCAATGGCTGCAAGCACCGCACCATGGCAGCCGCACCTCTTCTTC
AGCGGTTTTTCTAAAAAAACTGTCACCCGCCGCGGTCTTGATCTCTCGGGGGCACGGCAATACCTTTGGCCATCCGCATC
CACAGGTGATGGCGCGCTATAAGGCGCTGGGCATGACCATCCTGGACAGCGCTGAGCAGGGGGCAATCCGTTTTCGGCTG
GGCGCTTTCGGCGTGGCCGAAAGCCAGCGCGACCAACGGCGGTTTTGGCGAGACTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.425

0.583