Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   RHM62_RS16565 Genome accession   NZ_CP133777
Coordinates   3589413..3589838 (-) Length   141 a.a.
NCBI ID   WP_322123150.1    Uniprot ID   -
Organism   Actimicrobium sp. CCC2.4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584413..3594838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM62_RS16535 (RHM62_16535) - 3585166..3585759 (+) 594 WP_322123145.1 LemA family protein -
  RHM62_RS16540 (RHM62_16540) - 3585764..3586588 (+) 825 WP_322125431.1 TPM domain-containing protein -
  RHM62_RS16545 (RHM62_16545) - 3586594..3587088 (+) 495 WP_322123146.1 TPM domain-containing protein -
  RHM62_RS16550 (RHM62_16550) - 3587263..3587895 (+) 633 WP_322123147.1 response regulator transcription factor -
  RHM62_RS16555 (RHM62_16555) - 3587918..3588340 (+) 423 WP_322123148.1 response regulator -
  RHM62_RS16560 (RHM62_16560) - 3588464..3589333 (+) 870 WP_322123149.1 Crp/Fnr family transcriptional regulator -
  RHM62_RS16565 (RHM62_16565) pilE 3589413..3589838 (-) 426 WP_322123150.1 type IV pilin protein Machinery gene
  RHM62_RS16570 (RHM62_16570) - 3589854..3593375 (-) 3522 WP_322123151.1 pilus assembly protein -
  RHM62_RS16575 (RHM62_16575) - 3593386..3593895 (-) 510 WP_322123152.1 pilus assembly protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15141.25 Da        Isoelectric Point: 8.1013

>NTDB_id=876659 RHM62_RS16565 WP_322123150.1 3589413..3589838(-) (pilE) [Actimicrobium sp. CCC2.4]
MNHFYARQRGFTLVELIIVVAIVGILAAIAVPSYRSYVLKSRRADAMTALAQNQVILERCYAQSFTYNGVCVGLPVFPVA
SERGYYSVAISNQSATAYTLTATPVGTQASDTLCAVMSVDQTNQKSASDSSSVAQTACWNP

Nucleotide


Download         Length: 426 bp        

>NTDB_id=876659 RHM62_RS16565 WP_322123150.1 3589413..3589838(-) (pilE) [Actimicrobium sp. CCC2.4]
ATGAACCATTTTTATGCCCGCCAACGGGGTTTTACGCTGGTCGAACTGATCATCGTGGTTGCCATCGTCGGCATTCTGGC
GGCGATTGCCGTCCCCTCGTATCGCAGCTACGTACTCAAGTCACGTCGCGCCGATGCAATGACGGCACTGGCGCAAAACC
AGGTCATTCTGGAGCGCTGTTATGCACAAAGTTTTACGTACAACGGAGTCTGTGTCGGCTTGCCGGTTTTTCCGGTTGCT
TCCGAGCGGGGCTATTACAGCGTAGCCATATCGAATCAGAGCGCGACGGCCTACACGCTAACGGCCACGCCTGTCGGCAC
TCAAGCCAGTGATACGCTGTGTGCGGTCATGAGTGTGGATCAAACGAACCAGAAATCAGCGAGCGACAGCAGTAGTGTCG
CCCAGACCGCATGCTGGAATCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

57.447

100

0.574
  pilE Legionella pneumophila strain ERS1305867

57.447

100

0.574