Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RHM64_RS00695 Genome accession   NZ_CP133776
Coordinates   147603..148013 (+) Length   136 a.a.
NCBI ID   WP_322167063.1    Uniprot ID   -
Organism   Pseudomonas sp. AH2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 142603..153013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHM64_RS00665 (RHM64_00665) - 142624..143628 (-) 1005 WP_322167057.1 aspartate carbamoyltransferase catalytic subunit -
  RHM64_RS00670 (RHM64_00670) pyrR 143651..144163 (-) 513 WP_322167058.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RHM64_RS00675 (RHM64_00675) ruvX 144252..144692 (-) 441 WP_322167059.1 Holliday junction resolvase RuvX -
  RHM64_RS00680 (RHM64_00680) - 144692..145261 (-) 570 WP_322167060.1 YqgE/AlgH family protein -
  RHM64_RS00685 (RHM64_00685) - 145318..146217 (-) 900 WP_322167061.1 energy transducer TonB -
  RHM64_RS00690 (RHM64_00690) gshB 146399..147352 (-) 954 WP_322167062.1 glutathione synthase -
  RHM64_RS00695 (RHM64_00695) pilG 147603..148013 (+) 411 WP_322167063.1 twitching motility response regulator PilG Regulator
  RHM64_RS00700 (RHM64_00700) pilH 148065..148430 (+) 366 WP_299829060.1 twitching motility response regulator PilH -
  RHM64_RS00705 (RHM64_00705) - 148441..148980 (+) 540 WP_322167064.1 chemotaxis protein CheW -
  RHM64_RS00710 (RHM64_00710) - 149054..151096 (+) 2043 WP_322167065.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15105.60 Da        Isoelectric Point: 7.8859

>NTDB_id=876609 RHM64_RS00695 WP_322167063.1 147603..148013(+) (pilG) [Pseudomonas sp. AH2]
MEQHSTALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIKAHVPEFVAVEQQVS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=876609 RHM64_RS00695 WP_322167063.1 147603..148013(+) (pilG) [Pseudomonas sp. AH2]
ATGGAACAACATTCCACAGCTTTGAAAGTGATGGTTATCGACGATTCGAAGACGATTCGCCGAACCGCTGAGACGCTGTT
GAAAAACGTCGGTTGCGAAGTCATCACTGCAATCGACGGGTTTGATGCACTAGCGAAGATCGCGGATAACCACCCCAGAA
TTATTTTCGTCGACATCATGATGCCGCGTCTGGATGGCTATCAGACCTGCGCGTTGATCAAGAATAACCGTGCGTTCAAG
TCGACGCCGGTGATTATGCTGTCCTCCAAGGATGGCCTGTTCGACAAGGCCAAGGGCCGGATCGTCGGTTCCGACCAGTT
TCTGACCAAGCCTTTTAGCAAGGAAGAACTGCTGAATGCGATCAAGGCCCATGTGCCTGAATTCGTTGCAGTAGAACAAC
AAGTATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

91.912

0.699
  vicR Streptococcus mutans UA159

39.062

94.118

0.368