Detailed information NTG0876382

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RE654_RS21360
• Genome accession: NZ_CP133757
• Coordinates: 4595153..4596028 (-)
• Length: 291 a.a.
• NCBI ID: WP_309563200.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain LZSFT54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4590153..4601028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RE654_RS21335 (RE654_21335)	-	4591900..4593084 (+)	1185	WP_309563199.1	tetratricopeptide repeat protein	-
RE654_RS21340 (RE654_21340)	mutT	4593093..4593497 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
RE654_RS21345 (RE654_21345)	yacG	4593555..4593749 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
RE654_RS21350 (RE654_21350)	zapD	4593760..4594482 (-)	723	WP_010675825.1	cell division protein ZapD	-
RE654_RS21355 (RE654_21355)	coaE	4594520..4595134 (-)	615	WP_109111851.1	dephospho-CoA kinase	-
RE654_RS21360 (RE654_21360)	pilD	4595153..4596028 (-)	876	WP_309563200.1	A24 family peptidase	Machinery gene
RE654_RS21365 (RE654_21365)	pilC	4596106..4597347 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
RE654_RS21370 (RE654_21370)	pilB	4597475..4599181 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
RE654_RS21375 (RE654_21375)	-	4599185..4599616 (-)	432	WP_080944102.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
RE654_RS21380 (RE654_21380)	nadC	4599927..4600790 (-)	864	WP_069785553.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32155.24 Da
• Isoelectric Point: 6.5962

>NTDB_id=876382 RE654_RS21360 WP_309563200.1 4595153..4596028(-) (pilD) [Aeromonas caviae strain LZSFT54]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERTWHAEYSDYFGDGEETPPATGRYNLMEPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=876382 RE654_RS21360 WP_309563200.1 4595153..4596028(-) (pilD) [Aeromonas caviae strain LZSFT54]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTAATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGACCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGAGCCCCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCTGTCTCGGTAGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.282	0.601
pilD	Vibrio campbellii strain DS40M4	56.552	99.656	0.564
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46