Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WGQ50_RS07070 Genome accession   NZ_CP149884
Coordinates   1385704..1386291 (-) Length   195 a.a.
NCBI ID   WP_002810825.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380704..1391291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS07050 (WGQ50_07050) - 1381459..1382223 (+) 765 WP_002781156.1 TIGR02757 family protein -
  WGQ50_RS07055 (WGQ50_07055) - 1382226..1382990 (+) 765 WP_060785322.1 TSUP family transporter -
  WGQ50_RS07060 (WGQ50_07060) ctsF 1382987..1384162 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  WGQ50_RS07065 (WGQ50_07065) ctsE 1384149..1385711 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  WGQ50_RS07070 (WGQ50_07070) ctsX 1385704..1386291 (-) 588 WP_002810825.1 CDC27 family protein Machinery gene
  WGQ50_RS07075 (WGQ50_07075) ctsP 1386288..1386884 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  WGQ50_RS07080 (WGQ50_07080) ctsD 1386877..1388295 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WGQ50_RS07085 (WGQ50_07085) ctsR 1388273..1388584 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23446.85 Da        Isoelectric Point: 5.5246

>NTDB_id=876327 WGQ50_RS07070 WP_002810825.1 1385704..1386291(-) (ctsX) [Campylobacter coli strain NPRC(S) 01.13898]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEYKKTLNWQITQAQIANEKNKILQER
LSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSWVLF
AKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=876327 WGQ50_RS07070 WP_002810825.1 1385704..1386291(-) (ctsX) [Campylobacter coli strain NPRC(S) 01.13898]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTACAAGAAAGA
TTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGATTTTAAATAT
AAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATTATGAAAACA
AAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGGGTTTTATTT
GCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTATGGCTTGAT
TGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(113-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

54.487

80

0.436