Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WGQ50_RS05075 Genome accession   NZ_CP149884
Coordinates   984395..984943 (+) Length   182 a.a.
NCBI ID   WP_052780253.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 979395..989943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS05050 (WGQ50_05050) rseP 979510..980613 (+) 1104 WP_002777070.1 RIP metalloprotease RseP -
  WGQ50_RS05055 (WGQ50_05055) - 980610..981465 (+) 856 Protein_971 VirK family antimicrobial peptide resistance protein -
  WGQ50_RS05060 (WGQ50_05060) - 981458..982459 (-) 1002 WP_002777078.1 TIM barrel protein -
  WGQ50_RS05065 (WGQ50_05065) - 982459..983730 (-) 1272 WP_002777080.1 MFS transporter -
  WGQ50_RS05070 (WGQ50_05070) rpsF 984009..984386 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  WGQ50_RS05075 (WGQ50_05075) ssb 984395..984943 (+) 549 WP_052780253.1 single-stranded DNA-binding protein Machinery gene
  WGQ50_RS05080 (WGQ50_05080) rpsR 984954..985214 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  WGQ50_RS05085 (WGQ50_05085) lon 985270..987645 (-) 2376 WP_002783351.1 endopeptidase La -
  WGQ50_RS05090 (WGQ50_05090) bamD 987661..988308 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  WGQ50_RS05095 (WGQ50_05095) fliW 988473..988862 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  WGQ50_RS05100 (WGQ50_05100) proC 988862..989599 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  WGQ50_RS05105 (WGQ50_05105) ctsT 989596..989901 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20747.64 Da        Isoelectric Point: 4.8501

>NTDB_id=876306 WGQ50_RS05075 WP_052780253.1 984395..984943(+) (ssb) [Campylobacter coli strain NPRC(S) 01.13898]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQTYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=876306 WGQ50_RS05075 WP_052780253.1 984395..984943(+) (ssb) [Campylobacter coli strain NPRC(S) 01.13898]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
CTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379