Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   WGQ50_RS05105 Genome accession   NZ_CP149884
Coordinates   989596..989901 (+) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain NPRC(S) 01.13898     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984596..994901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ50_RS05080 (WGQ50_05080) rpsR 984954..985214 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  WGQ50_RS05085 (WGQ50_05085) lon 985270..987645 (-) 2376 WP_002783351.1 endopeptidase La -
  WGQ50_RS05090 (WGQ50_05090) bamD 987661..988308 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  WGQ50_RS05095 (WGQ50_05095) fliW 988473..988862 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  WGQ50_RS05100 (WGQ50_05100) proC 988862..989599 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  WGQ50_RS05105 (WGQ50_05105) ctsT 989596..989901 (+) 306 WP_002790525.1 hypothetical protein Machinery gene
  WGQ50_RS05110 (WGQ50_05110) - 989894..990562 (+) 669 WP_002790524.1 hypothetical protein -
  WGQ50_RS05115 (WGQ50_05115) - 990559..991011 (+) 453 WP_002777117.1 hypothetical protein -
  WGQ50_RS05120 (WGQ50_05120) - 991004..991633 (-) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  WGQ50_RS05125 (WGQ50_05125) thiE 991611..992243 (-) 633 WP_002783359.1 thiamine phosphate synthase -
  WGQ50_RS05130 (WGQ50_05130) thiD 992233..993045 (-) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  WGQ50_RS05135 (WGQ50_05135) - 993045..993728 (-) 684 WP_060785324.1 3-methyladenine DNA glycosylase -
  WGQ50_RS05140 (WGQ50_05140) - 993725..994486 (-) 762 WP_072212081.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=876308 WGQ50_RS05105 WP_002790525.1 989596..989901(+) (ctsT) [Campylobacter coli strain NPRC(S) 01.13898]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=876308 WGQ50_RS05105 WP_002790525.1 989596..989901(+) (ctsT) [Campylobacter coli strain NPRC(S) 01.13898]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475