Detailed information NTG0876211

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RG050_RS01410
• Genome accession: NZ_CP133744
• Coordinates: 79358..80158 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain KP26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 74358..85158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG050_RS01375 (RG050_01375)	gspH	74511..75026 (+)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-
RG050_RS01380 (RG050_01380)	gspI	75023..75388 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
RG050_RS01385 (RG050_01385)	gspJ	75385..75982 (+)	598	Protein_64	type II secretion system minor pseudopilin GspJ	-
RG050_RS01390 (RG050_01390)	gspK	75979..76965 (+)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
RG050_RS01395 (RG050_01395)	gspL	76952..78145 (+)	1194	WP_032434208.1	type II secretion system protein GspL	-
RG050_RS01400 (RG050_01400)	-	78138..78624 (+)	487	Protein_67	type II secretion system protein M	-
RG050_RS01405 (RG050_01405)	-	78614..79361 (+)	748	Protein_68	type II secretion system protein N	-
RG050_RS01410 (RG050_01410)	pilD	79358..80158 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
RG050_RS01415 (RG050_01415)	hrpB	80206..82635 (-)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
RG050_RS01420 (RG050_01420)	thpR	82708..83244 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
RG050_RS01425 (RG050_01425)	sfsA	83244..83960 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
RG050_RS01430 (RG050_01430)	dksA	84123..84578 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=876211 RG050_RS01410 WP_004213441.1 79358..80158(+) (pilD) [Klebsiella pneumoniae strain KP26]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=876211 RG050_RS01410 WP_004213441.1 79358..80158(+) (pilD) [Klebsiella pneumoniae strain KP26]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425