Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RF679_RS09865 Genome accession   NZ_CP133720
Coordinates   2351191..2351985 (+) Length   264 a.a.
NCBI ID   WP_309480470.1    Uniprot ID   -
Organism   Undibacterium cyanobacteriorum strain 20NA77.5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346191..2356985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF679_RS09845 (RF679_09845) phaC 2347101..2348825 (-) 1725 WP_373921666.1 class I poly(R)-hydroxyalkanoic acid synthase -
  RF679_RS09850 (RF679_09850) - 2349009..2349302 (+) 294 WP_309480467.1 hypothetical protein -
  RF679_RS09855 (RF679_09855) pgeF 2349319..2350107 (-) 789 WP_309480468.1 peptidoglycan editing factor PgeF -
  RF679_RS09860 (RF679_09860) - 2350104..2351147 (-) 1044 WP_309480469.1 RluA family pseudouridine synthase -
  RF679_RS09865 (RF679_09865) comL 2351191..2351985 (+) 795 WP_309480470.1 outer membrane protein assembly factor BamD Machinery gene
  RF679_RS09870 (RF679_09870) yaaA 2352100..2352879 (-) 780 WP_309480471.1 peroxide stress protein YaaA -
  RF679_RS09875 (RF679_09875) - 2352957..2353403 (+) 447 WP_309480472.1 putative toxin-antitoxin system toxin component, PIN family -
  RF679_RS09880 (RF679_09880) - 2353602..2354345 (+) 744 WP_309480473.1 protein phosphatase CheZ -
  RF679_RS09885 (RF679_09885) - 2354346..2356175 (+) 1830 WP_309480474.1 chemotaxis protein CheA -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30259.48 Da        Isoelectric Point: 7.9656

>NTDB_id=876097 RF679_RS09865 WP_309480470.1 2351191..2351985(+) (comL) [Undibacterium cyanobacteriorum strain 20NA77.5]
MHIKSVKLFSLILTLSLAGCGLFGDKVEESKNWPAEKLYAEAKDELASGSYERSIQLFEKLESRFPFGTFAQQAQLEIAY
AYYKQGEAAQALAAIERFIKLHPNHPNVDYMYYLRGLVNFNDDMGFLSFVANQDITERDPKATRDSFDAFKELVTQYPNS
KYTPDALLRMKYLVNALAQNDLHVAKYYYRRSAYLAAANRAQSAIKEYPDAPAIEEALVVLIKSYDAMGMKELRDDAKRV
YDKNFPNSTLLADGGKKKSWWKFW

Nucleotide


Download         Length: 795 bp        

>NTDB_id=876097 RF679_RS09865 WP_309480470.1 2351191..2351985(+) (comL) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGCACATTAAATCTGTAAAGTTGTTCAGTCTCATCCTAACTTTATCGCTCGCTGGCTGCGGTTTGTTTGGTGATAAAGT
TGAAGAGAGTAAAAATTGGCCAGCTGAGAAATTATACGCTGAAGCGAAGGATGAATTAGCATCCGGAAGCTATGAACGCT
CAATTCAGCTTTTTGAAAAACTCGAATCTCGTTTTCCGTTCGGTACGTTCGCGCAGCAAGCTCAATTAGAAATTGCTTAT
GCTTATTACAAACAAGGAGAGGCAGCGCAAGCACTCGCAGCAATTGAACGGTTTATCAAGTTGCACCCAAATCACCCAAA
TGTAGACTACATGTATTACCTACGGGGCTTGGTCAATTTCAATGACGACATGGGTTTTTTAAGTTTCGTAGCAAATCAAG
ACATTACAGAGCGTGACCCCAAGGCGACACGCGATTCGTTTGATGCTTTCAAGGAACTTGTCACTCAATATCCCAATAGC
AAATACACGCCTGATGCGCTACTGCGCATGAAGTATCTGGTGAACGCTCTGGCGCAGAATGATTTACACGTTGCCAAATA
TTACTATCGACGCAGTGCTTATTTGGCTGCGGCGAATCGCGCGCAATCGGCAATCAAAGAATATCCGGATGCGCCAGCGA
TCGAAGAAGCGCTTGTGGTGCTCATCAAATCTTACGATGCCATGGGCATGAAAGAATTGCGCGATGATGCGAAACGAGTC
TACGACAAGAACTTCCCCAATAGCACCTTACTCGCAGATGGCGGCAAGAAGAAATCTTGGTGGAAATTCTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.237

99.242

0.489
  comL Neisseria gonorrhoeae MS11

48.855

99.242

0.485