Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RF679_RS02940 Genome accession   NZ_CP133720
Coordinates   714362..715855 (-) Length   497 a.a.
NCBI ID   WP_309482733.1    Uniprot ID   -
Organism   Undibacterium cyanobacteriorum strain 20NA77.5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709362..720855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF679_RS02920 (RF679_02920) - 710593..711747 (+) 1155 WP_309482730.1 deoxyguanosinetriphosphate triphosphohydrolase -
  RF679_RS02925 (RF679_02925) - 711766..712473 (+) 708 WP_373921724.1 DUF4197 domain-containing protein -
  RF679_RS02930 (RF679_02930) - 712581..713672 (-) 1092 WP_309482731.1 enoyl-CoA hydratase/isomerase family protein -
  RF679_RS02935 (RF679_02935) hpf 713879..714223 (-) 345 WP_309482732.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RF679_RS02940 (RF679_02940) rpoN/rpoN1 714362..715855 (-) 1494 WP_309482733.1 RNA polymerase factor sigma-54 Machinery gene
  RF679_RS02945 (RF679_02945) lptB 715879..716622 (-) 744 WP_309482734.1 LPS export ABC transporter ATP-binding protein -
  RF679_RS02950 (RF679_02950) - 716640..717227 (-) 588 WP_309482735.1 LptA/OstA family protein -
  RF679_RS02955 (RF679_02955) lptC 717260..717880 (-) 621 WP_309482736.1 LPS export ABC transporter periplasmic protein LptC -
  RF679_RS02960 (RF679_02960) - 717882..718424 (-) 543 WP_309482737.1 HAD family hydrolase -
  RF679_RS02965 (RF679_02965) - 718424..719455 (-) 1032 WP_373921725.1 SIS domain-containing protein -
  RF679_RS02970 (RF679_02970) - 719707..720549 (+) 843 WP_309482738.1 BPSS1780 family membrane protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56297.16 Da        Isoelectric Point: 4.8057

>NTDB_id=876090 RF679_RS02940 WP_309482733.1 714362..715855(-) (rpoN/rpoN1) [Undibacterium cyanobacteriorum strain 20NA77.5]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELETLLIENPMLERVDDALDSAVRLLADGTINNATQQSESEFAVA
EKSEANGTEQATKTDNTDTNGDGETQISSEDDWSFEDAPISGTKNNDEEDGRPQLEAAQITLREYLLEQMRVTVREGRDR
ALIELIIDAIDENGYLCETLEDIHDSLPIDLCVEMEELQFALKMVQSFEPEGVGARSTTECLSLQIRRLPKIPFVTRRLA
LQIVEEHLALFAQRDFTKLRKLLQCDDEDLREAQCVIRMCNPKPGLAYSEGKSDYVVPDVVVKKMGDEWQVMLNRDVMPR
LRVNQLYANLMKQQRGDGSLSPQLQEARWLIKNMRQRFDTILRVAQAIVERQYNFFTHGAVAMRPLVLREIADTLGLHES
TISRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIKQLIGEEDQKKPLSDSKIADILGEQGMVIARRTVA
KYREALKIPPVSLRKSL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=876090 RF679_RS02940 WP_309482733.1 714362..715855(-) (rpoN/rpoN1) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGAAGCAAAGCTTACAGCTCCGCACTTCGCAACATCTAGCGCTGACACCGCAGTTGCAGCAATCGATACGCTTGCTGCA
GTTATCGACGCTGGAGCTCCATCAAGAACTTGAAACGCTCTTGATTGAAAATCCTATGCTCGAGCGTGTAGATGACGCAC
TCGATAGTGCGGTGCGACTGCTGGCGGATGGCACCATCAATAACGCCACTCAGCAGAGCGAATCAGAGTTTGCGGTGGCA
GAAAAATCCGAAGCTAACGGAACCGAACAAGCTACAAAAACCGACAACACTGACACCAACGGTGATGGTGAAACGCAGAT
CAGCAGCGAGGATGATTGGAGCTTCGAAGATGCACCAATCTCAGGCACTAAGAACAATGATGAAGAAGATGGTCGCCCGC
AATTAGAGGCCGCCCAAATCACTTTACGCGAGTATTTATTGGAGCAAATGCGCGTCACCGTCAGAGAAGGACGCGATCGC
GCTTTGATCGAGTTGATCATTGATGCAATTGATGAGAATGGCTACCTTTGTGAAACGCTCGAAGATATTCACGATAGTTT
GCCCATCGATCTTTGTGTCGAAATGGAGGAATTGCAGTTCGCACTCAAGATGGTGCAGAGTTTCGAGCCTGAGGGTGTTG
GTGCACGCAGCACCACTGAGTGTCTCAGCTTACAAATTCGACGCTTACCGAAAATTCCTTTCGTGACGCGTCGCTTGGCC
TTGCAGATTGTTGAGGAACATTTAGCCCTGTTTGCACAACGCGACTTCACCAAACTACGCAAACTGTTGCAATGTGACGA
CGAAGACTTGCGTGAAGCGCAATGCGTCATTCGCATGTGTAATCCTAAGCCTGGCCTCGCCTATTCGGAGGGTAAATCCG
ACTATGTAGTCCCTGATGTCGTTGTAAAAAAAATGGGTGACGAATGGCAGGTGATGTTGAATCGTGACGTTATGCCACGC
TTACGCGTGAATCAACTGTACGCTAACTTAATGAAGCAACAACGTGGCGATGGTAGTCTCAGCCCTCAACTTCAAGAAGC
TCGTTGGCTGATCAAAAATATGCGGCAGCGCTTTGATACGATTTTGCGCGTTGCACAAGCCATAGTCGAAAGACAATACA
ATTTCTTTACTCATGGTGCAGTTGCAATGCGCCCCCTTGTTTTACGCGAAATTGCTGATACACTGGGATTACACGAGAGC
ACTATTTCTCGTGTAACGACTCAAAAATACATGCTCACTCCGCATGGTATGTTTGAGTTGAAATACTTCTTCGGTAGTCA
CGTCGCCACCGAAGCTGGAGGTGAAGCCTCCTCGACGGCGATACGTGCTCTGATCAAACAATTAATAGGAGAAGAAGACC
AGAAAAAACCTCTCTCGGACAGTAAGATCGCCGACATTTTGGGAGAACAAGGCATGGTCATCGCTCGGCGAACGGTCGCT
AAGTATCGCGAGGCTCTGAAAATTCCCCCAGTCAGTTTGCGAAAATCTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-327)

Sigma-54, DNA binding domain (Sigma54_DBD)

(342-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.708

100

0.588