Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RF679_RS00065 Genome accession   NZ_CP133720
Coordinates   12568..14103 (-) Length   511 a.a.
NCBI ID   WP_309482181.1    Uniprot ID   -
Organism   Undibacterium cyanobacteriorum strain 20NA77.5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7568..19103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RF679_RS00050 (RF679_00050) - 8487..8744 (+) 258 WP_309482179.1 DUF3567 domain-containing protein -
  RF679_RS00055 (RF679_00055) - 9255..10445 (+) 1191 WP_309484053.1 M20 aminoacylase family protein -
  RF679_RS00060 (RF679_00060) - 10575..12221 (-) 1647 WP_309482180.1 methyl-accepting chemotaxis protein -
  RF679_RS00065 (RF679_00065) comM 12568..14103 (-) 1536 WP_309482181.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RF679_RS00070 (RF679_00070) - 14103..14348 (-) 246 WP_309482182.1 accessory factor UbiK family protein -
  RF679_RS00075 (RF679_00075) - 14731..15492 (+) 762 WP_309482183.1 TorF family putative porin -
  RF679_RS00080 (RF679_00080) - 15518..15856 (+) 339 WP_309482184.1 P-II family nitrogen regulator -
  RF679_RS00085 (RF679_00085) - 15880..17454 (+) 1575 WP_373921715.1 ammonium transporter -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55669.64 Da        Isoelectric Point: 7.7539

>NTDB_id=876089 RF679_RS00065 WP_309482181.1 12568..14103(-) (comM) [Undibacterium cyanobacteriorum strain 20NA77.5]
MSLAVLKSRALSGMSAPQVTVEVHLANGLPAFTIVGLPETEVKESKDRVRAAIQNSRFDFPAQRITVNLAPAELPKESGR
FDLPIALGILAASGQIPNDAFDDYEFAGELSLSGELRPIRGALAMTFAIAQSHQIDPSARLPHAAFILPIANAEEAALVK
QARILPAQSLLQVCAHFAARSDEQSLVAYASAAVGRLPCYPDLHEVKGQQKAKRALEIAAAGQHSALMIGPPGTGKSMLA
SRFPSILPSMTDVEGLESAAVQSLTGGFSIERWKQRPFRSPHHTASAVALVGGGGNPRPGEISLAHRGVLFLDELPEFDR
KVLEVLREPLESGHICISRAARQAEFPARFQLIAAMNPCPCGYFGHFNGKCRCTPDSIDRYQGRLSGPLLDRIDMQIPVN
ALPHEDLLKLADGESSDQIRARVEHAFQRQIERQGKSNSLLSTNEIDQYCQSEQAAIDLLQNAMSKFNWSARAFHRVLKL
ARTIADLSNHAVIKQQHVAEAIQYRRALKEH

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=876089 RF679_RS00065 WP_309482181.1 12568..14103(-) (comM) [Undibacterium cyanobacteriorum strain 20NA77.5]
ATGAGTTTAGCGGTGCTTAAAAGTCGCGCATTGAGCGGCATGTCAGCACCGCAAGTGACAGTCGAAGTCCATCTTGCGAA
TGGGCTTCCTGCTTTCACCATCGTTGGTCTTCCCGAGACCGAAGTCAAAGAATCAAAAGACCGTGTGCGGGCGGCGATTC
AAAATTCTCGTTTTGATTTTCCAGCTCAAAGAATCACGGTTAACCTAGCTCCTGCCGAACTCCCCAAAGAATCGGGGCGC
TTCGATTTGCCCATCGCCCTCGGGATTTTGGCGGCCTCCGGTCAAATCCCGAATGATGCTTTTGACGATTATGAATTCGC
TGGCGAGCTATCTCTTTCTGGCGAATTAAGGCCAATTCGCGGTGCTTTAGCGATGACCTTTGCGATTGCGCAAAGTCATC
AAATTGATCCGTCTGCACGTCTTCCCCATGCAGCCTTTATCCTACCGATTGCCAACGCCGAAGAAGCTGCTTTGGTTAAG
CAAGCCCGCATTTTGCCCGCTCAAAGTTTGCTGCAGGTATGCGCCCACTTCGCTGCAAGATCCGATGAGCAAAGCTTAGT
TGCATATGCCAGCGCCGCAGTTGGAAGGCTCCCATGCTATCCAGATTTGCACGAAGTGAAAGGGCAACAGAAGGCCAAAC
GAGCCCTTGAAATAGCTGCCGCCGGCCAACACAGCGCCTTAATGATAGGGCCACCAGGGACGGGCAAATCGATGCTGGCA
TCACGGTTTCCTAGCATTTTACCAAGTATGACCGACGTCGAGGGTTTGGAGTCAGCCGCTGTTCAATCACTCACAGGTGG
CTTTTCTATCGAACGCTGGAAACAACGGCCATTTCGTAGCCCTCATCACACGGCGTCGGCCGTGGCGCTAGTAGGCGGTG
GCGGCAATCCTCGCCCAGGTGAAATCTCGCTGGCCCATCGCGGTGTTTTATTTCTTGATGAACTACCAGAGTTCGACCGC
AAAGTCTTAGAGGTGTTACGCGAACCCCTCGAATCAGGGCACATATGCATCTCACGTGCCGCGCGCCAGGCCGAATTTCC
GGCACGCTTTCAATTGATTGCCGCAATGAATCCCTGTCCCTGTGGTTACTTCGGTCATTTTAATGGGAAATGTCGGTGCA
CTCCCGATTCGATCGACCGCTATCAGGGCCGTTTGTCTGGGCCATTATTAGACCGAATTGATATGCAAATTCCGGTCAAC
GCTCTGCCACACGAAGATCTATTAAAGCTTGCCGATGGTGAATCCAGCGACCAGATCCGAGCGCGTGTGGAACATGCATT
TCAACGGCAGATCGAGCGTCAAGGGAAGAGCAACAGCCTACTGTCCACTAATGAAATTGATCAGTATTGTCAATCGGAGC
AAGCTGCTATCGACCTGCTCCAAAACGCCATGAGCAAGTTCAACTGGTCTGCTCGTGCCTTTCATCGTGTGCTTAAACTC
GCACGAACTATTGCTGATTTATCAAACCATGCGGTCATAAAACAACAACATGTGGCAGAAGCGATACAGTATCGACGAGC
CCTCAAAGAACATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.264

100

0.548
  comM Vibrio campbellii strain DS40M4

52.713

100

0.532
  comM Glaesserella parasuis strain SC1401

52.25

100

0.523
  comM Haemophilus influenzae Rd KW20

51.468

100

0.515
  comM Legionella pneumophila str. Paris

50.098

100

0.501
  comM Legionella pneumophila strain ERS1305867

50.098

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.618

100

0.446