Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RGU78_RS17010 Genome accession   NZ_CP133712
Coordinates   3552615..3554036 (+) Length   473 a.a.
NCBI ID   WP_000840557.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CRAb1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3547615..3559036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS16990 (RGU78_17020) thrC 3547872..3549011 (+) 1140 WP_000063593.1 threonine synthase -
  RGU78_RS16995 (RGU78_17025) pbpG 3549116..3550162 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RGU78_RS17000 (RGU78_17030) - 3550375..3551010 (+) 636 WP_000633799.1 response regulator -
  RGU78_RS17005 (RGU78_17035) pilS 3551021..3552589 (+) 1569 WP_001160347.1 ATP-binding protein Regulator
  RGU78_RS17010 (RGU78_17040) pilR 3552615..3554036 (+) 1422 WP_000840557.1 sigma-54 dependent transcriptional regulator Regulator
  RGU78_RS17015 (RGU78_17045) - 3554040..3555224 (-) 1185 WP_000939107.1 S41 family peptidase -
  RGU78_RS17020 (RGU78_17050) gpmI 3555240..3556787 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  RGU78_RS17025 (RGU78_17055) lptG 3556914..3557984 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52988.16 Da        Isoelectric Point: 6.5058

>NTDB_id=876036 RGU78_RS17010 WP_000840557.1 3552615..3554036(+) (pilR) [Acinetobacter baumannii strain CRAb1]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVESDFAESALENKLLIGCSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETTPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDTTIDVSHLHPAPLRANISNPFASVAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=876036 RGU78_RS17010 WP_000840557.1 3552615..3554036(+) (pilR) [Acinetobacter baumannii strain CRAb1]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCAGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
AGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGTCTGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTTGTTCTCTGCCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGGCCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTAGTTCGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGACACCTAAACAATTAACAGAAGCGGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATA
CCACTATAGATGTATCTCATTTACATCCTGCTCCACTAAGAGCAAATATTTCTAATCCTTTTGCTTCGGTTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

97.463

100

0.975
  pilR Pseudomonas aeruginosa PAK

50.545

97.04

0.49