Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   RGU78_RS16850 Genome accession   NZ_CP133712
Coordinates   3520048..3520374 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain CRAb1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3515048..3525374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGU78_RS16830 (RGU78_16860) - 3515156..3515785 (-) 630 WP_000219964.1 FHA domain-containing protein -
  RGU78_RS16835 (RGU78_16865) gspD 3515826..3518096 (-) 2271 WP_001196431.1 type II secretion system secretin GspD -
  RGU78_RS16840 (RGU78_16870) - 3518138..3518974 (-) 837 WP_000870031.1 type II secretion system protein N -
  RGU78_RS16845 (RGU78_16875) gspN 3518974..3519717 (-) 744 WP_114229544.1 type II secretion system protein N -
  RGU78_RS16850 (RGU78_16880) hns 3520048..3520374 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  RGU78_RS16855 (RGU78_16885) - 3520569..3521009 (-) 441 WP_000661569.1 thioesterase family protein -
  RGU78_RS16860 (RGU78_16890) - 3521017..3522210 (-) 1194 WP_213067467.1 heme biosynthesis protein HemY -
  RGU78_RS16865 (RGU78_16895) - 3522220..3523059 (-) 840 WP_001230193.1 hypothetical protein -
  RGU78_RS16870 (RGU78_16900) - 3523068..3523835 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  RGU78_RS16875 (RGU78_16905) hemC 3523840..3524757 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=876033 RGU78_RS16850 WP_000801427.1 3520048..3520374(-) (hns) [Acinetobacter baumannii strain CRAb1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=876033 RGU78_RS16850 WP_000801427.1 3520048..3520374(-) (hns) [Acinetobacter baumannii strain CRAb1]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1