Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RFN66_RS18200 Genome accession   NZ_CP133705
Coordinates   3514686..3515324 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain CP47     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3509686..3520324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS18165 (RFN66_18165) - 3510876..3511307 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  RFN66_RS18170 (RFN66_18170) - 3511307..3511648 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  RFN66_RS18175 (RFN66_18175) - 3511641..3513119 (+) 1479 WP_023856152.1 Na+/H+ antiporter subunit D -
  RFN66_RS18180 (RFN66_18180) - 3513125..3513601 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  RFN66_RS18185 (RFN66_18185) - 3513601..3513885 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  RFN66_RS18190 (RFN66_18190) mnhG 3513869..3514243 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  RFN66_RS18195 (RFN66_18195) - 3514280..3514669 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  RFN66_RS18200 (RFN66_18200) comA 3514686..3515324 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  RFN66_RS18205 (RFN66_18205) comP 3515411..3517726 (-) 2316 WP_025809738.1 sensor histidine kinase Regulator
  RFN66_RS18210 (RFN66_18210) comX 3517747..3517917 (-) 171 WP_020452790.1 competence pheromone ComX -
  RFN66_RS18215 (RFN66_18215) - 3517889..3518800 (-) 912 WP_020452791.1 polyprenyl synthetase family protein -
  RFN66_RS18220 (RFN66_18220) degQ 3518986..3519126 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  RFN66_RS18225 (RFN66_18225) - 3519645..3519959 (+) 315 WP_031305040.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=875929 RFN66_RS18200 WP_003184849.1 3514686..3515324(-) (comA) [Bacillus paralicheniformis strain CP47]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=875929 RFN66_RS18200 WP_003184849.1 3514686..3515324(-) (comA) [Bacillus paralicheniformis strain CP47]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACTCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778