Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RFN66_RS14300 Genome accession   NZ_CP133705
Coordinates   2787174..2787509 (+) Length   111 a.a.
NCBI ID   WP_023855185.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2782174..2792509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS14280 (RFN66_14280) gcvT 2782603..2783697 (-) 1095 WP_095291099.1 glycine cleavage system aminomethyltransferase GcvT -
  RFN66_RS14285 (RFN66_14285) - 2784292..2785971 (+) 1680 WP_020452163.1 DEAD/DEAH box helicase -
  RFN66_RS14290 (RFN66_14290) - 2785978..2786772 (+) 795 WP_309539399.1 YqhG family protein -
  RFN66_RS14295 (RFN66_14295) sinI 2786964..2787140 (+) 177 WP_023855184.1 anti-repressor SinI Regulator
  RFN66_RS14300 (RFN66_14300) sinR 2787174..2787509 (+) 336 WP_023855185.1 transcriptional regulator SinR Regulator
  RFN66_RS14305 (RFN66_14305) tasA 2787614..2788408 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  RFN66_RS14310 (RFN66_14310) sipW 2788481..2789065 (-) 585 WP_065644169.1 signal peptidase I SipW -
  RFN66_RS14315 (RFN66_14315) tapA 2789062..2789790 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  RFN66_RS14320 (RFN66_14320) - 2790068..2790388 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  RFN66_RS14325 (RFN66_14325) - 2790418..2790600 (-) 183 WP_020452171.1 YqzE family protein -
  RFN66_RS14330 (RFN66_14330) comGG 2790689..2791054 (-) 366 WP_023855189.1 competence type IV pilus minor pilin ComGG -
  RFN66_RS14335 (RFN66_14335) comGF 2791066..2791554 (-) 489 WP_309539400.1 competence type IV pilus minor pilin ComGF -
  RFN66_RS14340 (RFN66_14340) comGE 2791463..2791810 (-) 348 WP_023855191.1 competence type IV pilus minor pilin ComGE -
  RFN66_RS14345 (RFN66_14345) comGD 2791794..2792231 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12962.60 Da        Isoelectric Point: 7.0171

>NTDB_id=875915 RFN66_RS14300 WP_023855185.1 2787174..2787509(+) (sinR) [Bacillus paralicheniformis strain CP47]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=875915 RFN66_RS14300 WP_023855185.1 2787174..2787509(+) (sinR) [Bacillus paralicheniformis strain CP47]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928