Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   RFN66_RS02205 Genome accession   NZ_CP133705
Coordinates   404691..405089 (-) Length   132 a.a.
NCBI ID   WP_023855672.1    Uniprot ID   A0AAW6KF42
Organism   Bacillus paralicheniformis strain CP47     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 399691..410089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS02180 (RFN66_02180) - 400019..400702 (-) 684 WP_020450090.1 amino acid ABC transporter permease -
  RFN66_RS02185 (RFN66_02185) - 400714..401589 (-) 876 WP_026580508.1 transporter substrate-binding domain-containing protein -
  RFN66_RS02190 (RFN66_02190) - 401773..402324 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  RFN66_RS02195 (RFN66_02195) - 402420..403145 (+) 726 WP_020450093.1 AAA family ATPase -
  RFN66_RS02200 (RFN66_02200) - 403215..404651 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  RFN66_RS02205 (RFN66_02205) nin/comJ 404691..405089 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  RFN66_RS02210 (RFN66_02210) nucA/comI 405107..405553 (-) 447 WP_309539697.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RFN66_RS02215 (RFN66_02215) - 405831..406034 (+) 204 WP_309540033.1 hypothetical protein -
  RFN66_RS02220 (RFN66_02220) - 406040..406843 (+) 804 WP_026580511.1 protein kinase -
  RFN66_RS02225 (RFN66_02225) - 407249..407989 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14928.99 Da        Isoelectric Point: 5.1700

>NTDB_id=875881 RFN66_RS02205 WP_023855672.1 404691..405089(-) (nin/comJ) [Bacillus paralicheniformis strain CP47]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=875881 RFN66_RS02205 WP_023855672.1 404691..405089(-) (nin/comJ) [Bacillus paralicheniformis strain CP47]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5