Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   RFN66_RS02210 Genome accession   NZ_CP133705
Coordinates   405107..405553 (-) Length   148 a.a.
NCBI ID   WP_309539697.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CP47     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 400107..410553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN66_RS02185 (RFN66_02185) - 400714..401589 (-) 876 WP_026580508.1 transporter substrate-binding domain-containing protein -
  RFN66_RS02190 (RFN66_02190) - 401773..402324 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  RFN66_RS02195 (RFN66_02195) - 402420..403145 (+) 726 WP_020450093.1 AAA family ATPase -
  RFN66_RS02200 (RFN66_02200) - 403215..404651 (+) 1437 WP_020450094.1 glycoside hydrolase family 1 protein -
  RFN66_RS02205 (RFN66_02205) nin/comJ 404691..405089 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  RFN66_RS02210 (RFN66_02210) nucA/comI 405107..405553 (-) 447 WP_309539697.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  RFN66_RS02215 (RFN66_02215) - 405831..406034 (+) 204 WP_309540033.1 hypothetical protein -
  RFN66_RS02220 (RFN66_02220) - 406040..406843 (+) 804 WP_026580511.1 protein kinase -
  RFN66_RS02225 (RFN66_02225) - 407249..407989 (-) 741 WP_020450098.1 ribonuclease YeeF family protein -
  RFN66_RS02230 (RFN66_02230) - 408393..410447 (+) 2055 WP_020450099.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16236.31 Da        Isoelectric Point: 6.2390

>NTDB_id=875882 RFN66_RS02210 WP_309539697.1 405107..405553(-) (nucA/comI) [Bacillus paralicheniformis strain CP47]
MDKIKSLLITLLAVAVVIIGIITGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSGYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=875882 RFN66_RS02210 WP_309539697.1 405107..405553(-) (nucA/comI) [Bacillus paralicheniformis strain CP47]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATAACCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGGTTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.265

99.324

0.628