Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   RFN65_RS08735 Genome accession   NZ_CP133703
Coordinates   1690869..1691672 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685869..1696672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS08715 (RFN65_08715) yqxC 1685980..1686825 (+) 846 WP_063335282.1 TlyA family RNA methyltransferase -
  RFN65_RS08720 (RFN65_08720) argR 1686923..1687372 (+) 450 WP_015384067.1 arginine repressor ArgR -
  RFN65_RS08725 (RFN65_08725) recN 1687409..1689139 (+) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  RFN65_RS08730 (RFN65_08730) spoIVB 1689314..1690594 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  RFN65_RS08735 (RFN65_08735) spo0A 1690869..1691672 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RFN65_RS08740 (RFN65_08740) yqiG 1692138..1693256 (-) 1119 WP_309530237.1 NADH-dependent flavin oxidoreductase -
  RFN65_RS08745 (RFN65_08745) - 1693329..1693481 (-) 153 WP_015384065.1 hypothetical protein -
  RFN65_RS08750 (RFN65_08750) - 1693789..1694085 (+) 297 WP_015384064.1 hypothetical protein -
  RFN65_RS08755 (RFN65_08755) yqiI 1694105..1694725 (+) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  RFN65_RS08760 (RFN65_08760) glpQB 1694798..1695529 (+) 732 WP_047182859.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=875836 RFN65_RS08735 WP_003226427.1 1690869..1691672(+) (spo0A) [Bacillus subtilis strain CP35]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=875836 RFN65_RS08735 WP_003226427.1 1690869..1691672(+) (spo0A) [Bacillus subtilis strain CP35]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACACATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1