Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RFN65_RS08725 Genome accession   NZ_CP133703
Coordinates   1687409..1689139 (+) Length   576 a.a.
NCBI ID   WP_047182861.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682409..1694139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS08700 (RFN65_08700) xseB 1682773..1683027 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  RFN65_RS08705 (RFN65_08705) ispA 1683017..1683907 (+) 891 WP_032726127.1 polyprenyl synthetase family protein -
  RFN65_RS08710 (RFN65_08710) dxs 1684082..1685983 (+) 1902 WP_015384069.1 1-deoxy-D-xylulose-5-phosphate synthase -
  RFN65_RS08715 (RFN65_08715) yqxC 1685980..1686825 (+) 846 WP_063335282.1 TlyA family RNA methyltransferase -
  RFN65_RS08720 (RFN65_08720) argR 1686923..1687372 (+) 450 WP_015384067.1 arginine repressor ArgR -
  RFN65_RS08725 (RFN65_08725) recN 1687409..1689139 (+) 1731 WP_047182861.1 DNA repair protein RecN Machinery gene
  RFN65_RS08730 (RFN65_08730) spoIVB 1689314..1690594 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  RFN65_RS08735 (RFN65_08735) spo0A 1690869..1691672 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  RFN65_RS08740 (RFN65_08740) yqiG 1692138..1693256 (-) 1119 WP_309530237.1 NADH-dependent flavin oxidoreductase -
  RFN65_RS08745 (RFN65_08745) - 1693329..1693481 (-) 153 WP_015384065.1 hypothetical protein -
  RFN65_RS08750 (RFN65_08750) - 1693789..1694085 (+) 297 WP_015384064.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64570.44 Da        Isoelectric Point: 4.7697

>NTDB_id=875835 RFN65_RS08725 WP_047182861.1 1687409..1689139(+) (recN) [Bacillus subtilis strain CP35]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGTEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=875835 RFN65_RS08725 WP_047182861.1 1687409..1689139(+) (recN) [Bacillus subtilis strain CP35]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGTGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGTATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGACCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTAGAAGATATATCTGATATTAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATATGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAATAGGGACAGCCACCTTCAAAGCTT
GAAAAAAGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGACACGGAATTTAAGGTC
AGAACAGCGTCACGAAATGAAGAGGCTCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAATTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCAAAAGTTGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGGAGGGTCGCACAGGCAATTGCTGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTTTGTATTACACACCT
CCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997