Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RFN65_RS04945 Genome accession   NZ_CP133703
Coordinates   985666..986310 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 980666..991310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS04915 (RFN65_04915) - 981081..981449 (-) 369 WP_015483634.1 hypothetical protein -
  RFN65_RS04920 (RFN65_04920) - 981564..981689 (-) 126 WP_154796978.1 hypothetical protein -
  RFN65_RS04925 (RFN65_04925) degQ 981911..982051 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RFN65_RS04930 (RFN65_04930) - 982236..983096 (+) 861 WP_015483633.1 polyprenyl synthetase family protein -
  RFN65_RS04935 (RFN65_04935) comX 983109..983273 (+) 165 WP_015384519.1 competence pheromone ComX -
  RFN65_RS04940 (RFN65_04940) comP 983285..985585 (+) 2301 WP_309530127.1 histidine kinase Regulator
  RFN65_RS04945 (RFN65_04945) comA 985666..986310 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RFN65_RS04950 (RFN65_04950) yuxO 986329..986709 (+) 381 WP_015483631.1 hotdog fold thioesterase -
  RFN65_RS04955 (RFN65_04955) mnhG 986748..987122 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  RFN65_RS04960 (RFN65_04960) mrpF 987106..987390 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RFN65_RS04965 (RFN65_04965) mrpE 987390..987866 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  RFN65_RS04970 (RFN65_04970) mrpD 987872..989353 (-) 1482 WP_309530128.1 Na+/H+ antiporter subunit D -
  RFN65_RS04975 (RFN65_04975) mrpC 989346..989687 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  RFN65_RS04980 (RFN65_04980) mrpB 989687..990118 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=875812 RFN65_RS04945 WP_003220716.1 985666..986310(+) (comA) [Bacillus subtilis strain CP35]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=875812 RFN65_RS04945 WP_003220716.1 985666..986310(+) (comA) [Bacillus subtilis strain CP35]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAAGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1