Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   TOL5_RS01585 Genome accession   NZ_AP024708
Coordinates   345516..347084 (-) Length   522 a.a.
NCBI ID   WP_221260636.1    Uniprot ID   -
Organism   Acinetobacter sp. Tol 5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 340516..352084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOL5_RS01570 (TOL5_03000) gpmI 341236..342783 (+) 1548 WP_121774267.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  TOL5_RS01575 (TOL5_03010) - 342812..343984 (+) 1173 WP_042088582.1 S41 family peptidase -
  TOL5_RS01580 (TOL5_03020) pilR 344083..345498 (-) 1416 WP_005035339.1 sigma-54-dependent transcriptional regulator Regulator
  TOL5_RS01585 (TOL5_03030) pilS 345516..347084 (-) 1569 WP_221260636.1 sensor histidine kinase Regulator
  TOL5_RS01590 (TOL5_03040) - 347121..347756 (-) 636 WP_221260637.1 response regulator -
  TOL5_RS01595 (TOL5_03050) pbpG 347989..349041 (+) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  TOL5_RS01600 (TOL5_03060) - 349211..349825 (+) 615 WP_004826322.1 DUF6915 family protein -
  TOL5_RS01605 (TOL5_03070) - 349845..350618 (+) 774 WP_199995483.1 hypothetical protein -
  TOL5_RS01610 (TOL5_03080) thrC 350683..351822 (-) 1140 WP_009584439.1 threonine synthase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59377.04 Da        Isoelectric Point: 5.7777

>NTDB_id=87579 TOL5_RS01585 WP_221260636.1 345516..347084(-) (pilS) [Acinetobacter sp. Tol 5]
MSSTVSVPIYQTIYRLGTLYSGYRLIIAFCLIIIFLITLENQPVHYEYPSLYFYSIATFTIIAALQMMLLKFYPHGVAQQ
FIGFFIVDIPFLSILVFALNGPNLAISILFVIAVFTANFLLSKNKALFITLVSVIAIIYQQFLGSYFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACSLLGISPLYAHE
QYHLSNFQPDLYEILKDAMFRDGERFQFESQQSSFTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFLMSDEQQQALLHQMITKQTVRINSIIKDTLDMAKNKKTHASQIDLPLFLEDLLLHDLSDAQ
TKIQTEIEADLVIYFDDSQLRQVLVNLLRNALRHNDQNAEYVLVKAFKNDAHICIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPRMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=87579 TOL5_RS01585 WP_221260636.1 345516..347084(-) (pilS) [Acinetobacter sp. Tol 5]
ATGTCGTCTACGGTATCTGTGCCTATTTATCAAACAATTTACCGTCTAGGCACACTTTACTCAGGTTATCGACTGATTAT
TGCCTTTTGTTTAATCATTATTTTTCTGATTACCTTAGAAAATCAGCCTGTTCACTACGAATACCCAAGTTTATATTTTT
ATTCGATTGCGACCTTTACCATCATTGCAGCATTGCAAATGATGCTGTTGAAATTTTACCCTCATGGCGTTGCACAGCAG
TTTATTGGCTTTTTTATTGTTGATATTCCATTCCTCAGTATCTTGGTATTTGCGCTGAATGGTCCAAATTTAGCCATCAG
TATTTTATTTGTGATTGCAGTCTTTACTGCAAATTTTTTACTGAGTAAAAACAAAGCATTATTTATTACCTTAGTGTCTG
TCATTGCCATTATCTATCAGCAATTTCTGGGCAGTTATTTTGATTTTTCTAATTTAAATAATATTAGTAATAGTGCCTTA
TTGGCTTTCTTGTTTTTTATGGTGTACGGAATCGGGCAAATTGCAATCAACCGTTTTCAGGTTCTTGAGTCCTTAAATAC
GTACCAATCTTTAGAGCTTTTTAAGCTACAAAACATCAACCGCTATATTTTAGAACAAATCGAAGTCGGTTATTTGGTAC
TCGATGAAAAATGTAAAATTATTGTCAGTAATCCTGCCGCATGTTCACTATTAGGGATATCTCCCCTGTATGCACATGAA
CAATATCATTTATCCAATTTCCAGCCTGATCTCTATGAAATTTTAAAAGATGCCATGTTTCGAGATGGTGAGCGTTTTCA
ATTTGAATCACAGCAATCTTCATTTACCGTTGATATTCGGGTACAAAAACTGATTGTTCCACATCAGGCGCTCACACTTC
TTGTACTTGAAGATGCACAAAAAATAAATCAAAAGGTACAACAGCTTAAACTTGCAGCATTAGGACAATTATCAGCAAGT
ATTGCTCATGAGATACGTAATCCACTCGCTGCCATTGCGCAGGCAAATGATCTTTTTCTGATGAGTGATGAACAGCAGCA
AGCCTTACTCCATCAAATGATTACCAAGCAGACTGTCCGTATTAACAGTATTATCAAAGATACTTTAGATATGGCAAAAA
ACAAAAAAACCCATGCCAGTCAAATCGACTTACCACTATTTTTAGAAGATTTATTGTTACACGATTTAAGTGATGCTCAA
ACTAAAATCCAAACTGAAATTGAAGCAGATCTTGTGATTTATTTTGATGATTCGCAATTAAGGCAAGTACTTGTCAATCT
ATTGCGTAATGCATTACGCCATAATGATCAAAATGCGGAATACGTTTTGGTCAAGGCGTTTAAAAATGACGCACATATTT
GTATAGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCACAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAAACTATATGCGAAGCAAATCAAGCGAAATTAATTTACGTTGAGCA
AAAACAACAAGGGGCATGCTTTCGTATCGAATGCCCACGCATGGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-519)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.431

97.701

0.571

Multiple sequence alignment