Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RG306_RS19485 Genome accession   NZ_CP133666
Coordinates   4212230..4213645 (+) Length   471 a.a.
NCBI ID   WP_005035339.1    Uniprot ID   A0A0A8TL64
Organism   Acinetobacter bereziniae strain UCO-553     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4207230..4218645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS19465 (RG306_19465) thrC 4207326..4208465 (+) 1140 WP_005035341.1 threonine synthase -
  RG306_RS19470 (RG306_19470) pbpG 4208687..4209739 (-) 1053 WP_004826319.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  RG306_RS19475 (RG306_19475) - 4209972..4210607 (+) 636 WP_004718392.1 response regulator -
  RG306_RS19480 (RG306_19480) pilS 4210644..4212212 (+) 1569 WP_004826317.1 PAS domain-containing sensor histidine kinase Regulator
  RG306_RS19485 (RG306_19485) pilR 4212230..4213645 (+) 1416 WP_005035339.1 sigma-54 dependent transcriptional regulator Regulator
  RG306_RS19490 (RG306_19490) - 4213744..4214916 (-) 1173 WP_042088582.1 S41 family peptidase -
  RG306_RS19495 (RG306_19495) gpmI 4214945..4216492 (-) 1548 WP_005035335.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  RG306_RS19500 (RG306_19500) lptG 4216659..4217729 (-) 1071 WP_004826310.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53063.08 Da        Isoelectric Point: 6.7083

>NTDB_id=875779 RG306_RS19485 WP_005035339.1 4212230..4213645(+) (pilR) [Acinetobacter bereziniae strain UCO-553]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLSETVTKAPLEESMLIGDSQIIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFIAINCGAISEELMESELFGHKKGCFSGATQDKQGLVQAANGGTLFLDE
VAELSLAMQAKLLRAVQEKKIRPLGSDTEIEVDFRIISATHQNIEALVEQGKFRHDLFFRIHVMDITLPPLRDRERDILI
LANHFIQQICTEWRIPSKSFTDAAKAFLLQQHYSGNVRELRNIIEKAITMCDEDSIDIQQLQPAPQRSSINKIESFESVP
TNHTAIELPNKAPNIPKEGLEQYLENVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=875779 RG306_RS19485 WP_005035339.1 4212230..4213645(+) (pilR) [Acinetobacter bereziniae strain UCO-553]
ATGACTACACGACAACCATTGGTGTTACTTGTAGATGATGAACAAGATTTATGTATGTTGATGCAAATGAGCCTATCGCG
AATGGGTATCAAAACACATATGGCACATCATTTACAGCAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACAGATTTAAACTTGCCTGATGGGAGTGGTTTAGATTTAGTCAAACATGTATCGCAACATTATCCTAAAACGCCAATC
GCTGTACTCACAGCATATGGCAATATGGAAATCGCAATTGCATCACTTAAAGCTGGGGCTTTTGATTTCGTTAGCAAACC
AATCAATCAACTACATTTACAGCAACTTTTACAAAAAGCTTTACATGTTCCTCAGTTGAGTGAAACTGTAACTAAAGCCC
CACTTGAAGAGTCCATGCTCATTGGCGACTCGCAAATCATTCGTAAATTAAGAGAATCGATTAAAAAAATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGGGAGTCTGGTACAGGGAAAGAAGTGGTTGCGAATCTTATTCATTTACTCAGTAACCG
CAGTGATAGTCCATTTATTGCAATCAACTGCGGGGCTATCTCTGAAGAACTGATGGAAAGTGAGCTTTTCGGACATAAGA
AAGGCTGTTTCTCTGGCGCAACGCAAGATAAACAAGGCTTGGTTCAGGCTGCCAATGGTGGCACATTGTTCTTGGATGAA
GTCGCAGAATTGTCTTTAGCCATGCAAGCTAAACTTTTACGTGCTGTTCAGGAAAAGAAAATCCGTCCTTTGGGTAGCGA
TACTGAAATAGAAGTTGACTTTCGAATCATCAGTGCAACGCATCAAAATATCGAAGCTCTGGTTGAACAAGGGAAGTTCC
GCCATGACTTGTTTTTTAGAATCCATGTCATGGATATTACACTCCCGCCATTACGTGATCGCGAACGTGACATCTTGATT
TTAGCCAATCATTTTATTCAACAAATTTGTACTGAATGGCGAATTCCGAGCAAATCATTCACAGATGCAGCAAAAGCATT
TCTTTTACAGCAACATTATTCTGGTAATGTTCGTGAACTGCGCAATATTATTGAAAAAGCCATCACGATGTGTGATGAGG
ATTCTATCGATATTCAACAACTCCAACCTGCGCCACAACGGAGCAGTATTAACAAAATTGAATCCTTTGAGTCTGTTCCG
ACCAACCATACGGCGATTGAACTTCCAAACAAAGCACCGAATATTCCGAAAGAAGGCTTGGAGCAATATTTGGAAAATGT
TGAAAAAGAAGTCTTGTTATCTGCATTAAATCAAACCCATTGGAATCGGACCTTAGCTGCGAAAAAACTCGGCATGACCT
TTCGATCTTTACGTTATCGTTTGAAAAAGTTTGGTCTAGATACTGATGATGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8TL64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

69.915

100

0.701
  pilR Pseudomonas aeruginosa PAK

47.186

98.089

0.463