Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   RG306_RS19195 Genome accession   NZ_CP133666
Coordinates   4152780..4156559 (-) Length   1259 a.a.
NCBI ID   WP_200150012.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4147780..4161559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS19160 (RG306_19160) - 4147971..4148933 (+) 963 WP_005035435.1 alpha/beta fold hydrolase -
  RG306_RS19165 (RG306_19165) rplS 4149368..4149739 (-) 372 WP_004826442.1 50S ribosomal protein L19 -
  RG306_RS19170 (RG306_19170) trmD 4149944..4150693 (-) 750 WP_005035433.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RG306_RS19175 (RG306_19175) rimM 4150734..4151282 (-) 549 WP_005035430.1 ribosome maturation factor RimM -
  RG306_RS19180 (RG306_19180) rpsP 4151305..4151562 (-) 258 WP_004826436.1 30S ribosomal protein S16 -
  RG306_RS19185 (RG306_19185) - 4151708..4152193 (-) 486 WP_005035428.1 type IV pilin protein -
  RG306_RS19190 (RG306_19190) - 4152193..4152792 (-) 600 WP_005035426.1 type IV pilin protein -
  RG306_RS19195 (RG306_19195) pilY1 4152780..4156559 (-) 3780 WP_200150012.1 VWA domain-containing protein Machinery gene
  RG306_RS19200 (RG306_19200) - 4156575..4157405 (-) 831 WP_005035422.1 PilX N-terminal domain-containing pilus assembly protein -
  RG306_RS19205 (RG306_19205) pilW 4157402..4158418 (-) 1017 WP_171067105.1 PilW family protein Machinery gene
  RG306_RS19210 (RG306_19210) pilV 4158394..4158942 (-) 549 WP_026040258.1 type IV pilus modification protein PilV Machinery gene
  RG306_RS19215 (RG306_19215) - 4158943..4159443 (-) 501 WP_005035416.1 GspH/FimT family pseudopilin -
  RG306_RS19220 (RG306_19220) ispH 4159585..4160535 (-) 951 WP_005035414.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RG306_RS19225 (RG306_19225) gmk 4160670..4161290 (+) 621 WP_005035411.1 guanylate kinase -

Sequence

Protein


Download         Length: 1259 a.a.        Molecular weight: 132973.26 Da        Isoelectric Point: 7.9678

>NTDB_id=875771 RG306_RS19195 WP_200150012.1 4152780..4156559(-) (pilY1) [Acinetobacter bereziniae strain UCO-553]
MKKQRNWFITELKLTQLSRGVSFVAGFVGTTLIASSVVQASDLQIYATPTAGKKTIVMMLDTSGSMSGGDSGQSGSRLTR
LKNGMNTFLDSNNPILTDVRVGLGHYSVNGDGKTARILVEANALGTVNSSQRQALKKAVAGLSASGNTPTAHAFAEAAAY
LMGTSPALKLNNAEVYFRYGGSNSSYWASCLSWNSAKTSCTSWGGTSTSTRNTTGLSSQSCTKYIDDQGRSYSGTCYSGS
EVILSLSGFNNSASSTKNGNQYLSPLPPVDERVSCDGQGVYILSDGEANGSSPSEATSIMSVVLDDNGTNFSCPSNGLNT
GSAASWHCMGEFAKRLFDKTSNPAQVSIQTAFVGFGSDFNSLSQTHVQQACKLSSRTQADRTGDDACSPGNGSVSVTSPG
YGNGGFFTTQSAQGVTDSVVAFINNLGKAPLEPLTTGAISVPVDNLNPSGLQPYGYLRGLEPNPQSSDLIWAGNLKKYQV
IQTGSNAGAFAAIGSKLVYDKQGGFNTGTRDLWNSSNVYSGKVYNDGGVIRLGGAYSKVPMPILGQTENLAIDPPQYAYT
ANPNALRNLFTDVQSTGGANLTNAGKNANLIKVPGGGIPTSGAANYVLDQFKNQTTLKDFPVLTKIKLLNYLGFSVPYDE
TATTLPTSLQTPNSPFLAMGGSIHSLPVQLTYSGTLDETGNLTSTRSQSVLYGTMDGGLHIVDGSTGAEQMAFIPAELLR
SDTGSKALIKGQTDTNAPVSGTDGAWISDSTYQTQRGSGSNSSAVKALSMNIYGGMRMGGSSYYALDVLNPSSPKLKFRL
GADVTGFGRIGQSWSKPVLANVRYNGVNKRVMIVGGGYDQCYENPQFELGKAVSNVDFPDTSCDKKIQAQGNAVYMVDAN
DGTLIWSATYGANSTDDKKYLKHSIVSRISAIDRDGDGLVDNLYFGDLGGQVFRADLDNYQTKSGSAYSNFGVRVSRIAN
LATNDSLNNKDWDYTGSKAPRFYEAPTLTIHDEGANTFLVVGLASGNRSTPLDVVPTVGREKLLPTTALSGRPVNNVYGL
IDRDFIEPNLMKSTYSVKTSSLSLDLLQKNPQLLTGKIANAFFGTGNLKQGWYRSLSSMSNGTERGGTAFRVAGGMKAYE
EPFAITGNLIIPVYDPQGTGISGQDPCKPRVVGETDRQVFCLPYGACLKTDGTVDGGAAGQESKTGFQTTTTGCPAGVSE
CNDNVIGTGIRGLAMAPITSSTPNSACSDKTLAGNEKGTGKWACQQIINPTRWYDKWLK

Nucleotide


Download         Length: 3780 bp        

>NTDB_id=875771 RG306_RS19195 WP_200150012.1 4152780..4156559(-) (pilY1) [Acinetobacter bereziniae strain UCO-553]
ATGAAAAAACAGAGAAATTGGTTCATTACTGAATTAAAACTGACTCAATTAAGTCGAGGTGTTTCATTTGTCGCTGGTTT
TGTGGGGACAACATTAATCGCATCCTCTGTTGTACAGGCAAGTGATTTACAGATTTATGCAACACCAACAGCTGGGAAAA
AAACCATTGTCATGATGTTGGATACATCAGGAAGTATGAGCGGTGGAGACTCTGGTCAATCAGGGTCAAGATTAACGCGT
TTAAAAAATGGTATGAACACCTTTTTAGACAGTAATAATCCGATTTTAACCGATGTACGTGTTGGATTAGGACATTATTC
TGTAAATGGTGATGGTAAAACAGCAAGAATTTTGGTTGAGGCAAATGCTTTAGGAACTGTAAATTCGAGTCAACGTCAGG
CATTGAAGAAAGCTGTTGCTGGTTTATCTGCTTCAGGAAATACACCTACAGCTCATGCGTTTGCGGAAGCAGCTGCGTAC
TTAATGGGGACAAGTCCCGCTTTAAAGCTTAATAATGCCGAAGTATATTTTAGATATGGTGGAAGTAATTCATCATATTG
GGCGAGCTGTTTATCATGGAATAGTGCTAAGACATCATGTACAAGTTGGGGTGGAACGTCTACATCGACACGGAATACAA
CAGGTTTGAGCTCACAAAGCTGTACGAAATATATTGATGACCAAGGGCGAAGTTATTCAGGTACTTGTTATTCAGGGAGC
GAAGTAATTCTTTCATTGAGTGGTTTTAATAACTCAGCAAGTAGCACAAAAAATGGAAATCAATATCTCTCTCCTCTACC
TCCAGTTGATGAGCGAGTAAGTTGTGATGGGCAAGGTGTTTATATTTTGTCGGATGGTGAGGCAAATGGTTCAAGTCCAT
CTGAAGCAACATCTATTATGTCGGTAGTTTTAGATGATAATGGAACTAACTTCTCTTGCCCATCTAATGGATTAAATACT
GGATCAGCTGCTTCTTGGCATTGTATGGGGGAATTTGCCAAAAGACTGTTTGATAAAACAAGCAATCCTGCTCAAGTTTC
TATTCAAACAGCATTTGTCGGTTTTGGCAGTGACTTTAATAGTTTATCACAGACGCATGTTCAGCAAGCATGTAAACTGA
GCTCGCGCACCCAAGCAGATCGTACAGGTGATGATGCTTGCTCACCAGGAAATGGTTCTGTTTCAGTTACGTCTCCAGGT
TATGGTAATGGAGGTTTTTTTACGACTCAGTCCGCTCAAGGTGTAACAGATAGTGTTGTTGCATTTATTAATAACTTGGG
TAAAGCACCTCTAGAACCCTTAACGACTGGTGCGATTTCTGTTCCAGTGGATAATTTAAACCCTTCTGGACTCCAACCTT
ATGGATATTTACGAGGACTTGAACCTAATCCCCAATCTTCAGATCTTATTTGGGCGGGGAACTTAAAAAAATACCAAGTC
ATTCAAACAGGGAGTAATGCCGGTGCATTTGCGGCTATTGGATCAAAACTTGTGTATGACAAACAAGGTGGTTTTAATAC
AGGAACACGTGATTTGTGGAATAGTTCAAATGTGTATAGTGGCAAGGTTTATAATGATGGAGGGGTAATTCGCTTGGGTG
GAGCTTATTCTAAAGTTCCTATGCCAATACTTGGTCAAACAGAAAATCTTGCGATTGATCCTCCGCAATATGCTTATACA
GCTAATCCAAATGCTTTACGTAATTTATTTACAGATGTTCAGTCTACTGGTGGGGCAAATTTAACCAATGCCGGCAAAAA
TGCAAATCTGATTAAGGTGCCTGGTGGTGGTATACCAACGAGTGGAGCGGCAAACTATGTGTTGGATCAATTTAAAAACC
AAACAACTTTAAAAGACTTTCCTGTTTTAACCAAAATAAAATTATTAAACTATCTTGGTTTTAGTGTGCCATACGATGAA
ACAGCTACAACACTACCTACTTCATTGCAAACACCGAATTCGCCTTTCTTAGCTATGGGAGGCAGTATCCATTCACTTCC
TGTTCAATTGACCTATTCTGGAACATTAGATGAAACTGGTAATTTAACTTCTACACGTAGTCAATCCGTTTTATATGGCA
CTATGGATGGTGGATTACATATTGTGGATGGCTCAACTGGAGCTGAACAAATGGCTTTTATTCCAGCAGAGCTCCTAAGA
AGTGATACAGGTTCAAAAGCTTTAATTAAAGGGCAGACAGATACAAATGCCCCAGTTTCAGGGACAGATGGTGCTTGGAT
ATCCGATTCCACTTATCAGACTCAACGTGGTTCTGGATCAAACTCAAGTGCTGTTAAAGCGCTGTCAATGAATATCTATG
GTGGAATGCGGATGGGGGGATCAAGCTATTATGCTTTGGATGTCTTGAACCCCTCTTCTCCAAAACTGAAATTTAGACTG
GGCGCAGACGTTACTGGATTTGGGCGTATTGGTCAGTCTTGGTCCAAACCTGTACTTGCCAATGTCAGATATAATGGTGT
TAATAAACGAGTGATGATTGTGGGAGGGGGGTATGACCAGTGTTATGAAAACCCTCAATTTGAACTAGGCAAGGCCGTGT
CTAACGTAGACTTCCCTGATACTAGTTGTGATAAGAAAATACAAGCACAAGGTAATGCCGTCTATATGGTTGATGCAAAT
GATGGGACTTTGATCTGGTCAGCAACATATGGAGCGAATTCAACTGACGACAAAAAGTATCTAAAGCATAGCATTGTTAG
TCGTATCAGTGCGATAGATCGTGATGGAGATGGTTTGGTTGATAACTTGTATTTTGGGGATTTAGGCGGACAGGTTTTCC
GAGCAGATTTAGATAATTATCAAACTAAATCAGGATCAGCTTACAGTAACTTTGGTGTTAGAGTGAGTCGAATTGCGAAT
CTTGCAACTAATGATTCTTTGAATAATAAAGATTGGGACTATACTGGCAGTAAAGCACCTAGATTCTATGAAGCTCCAAC
TTTAACTATCCATGACGAAGGTGCAAATACTTTTCTTGTTGTTGGTTTAGCATCAGGAAATAGAAGTACACCGCTCGATG
TTGTTCCAACAGTAGGACGAGAAAAGTTATTACCTACGACAGCGTTATCTGGGCGACCTGTTAATAATGTATACGGTCTG
ATTGATCGAGACTTCATTGAACCCAATTTAATGAAATCAACATATTCAGTTAAGACGAGTAGTCTAAGCTTAGATCTACT
ACAGAAAAACCCTCAATTGCTTACAGGTAAAATTGCAAATGCCTTTTTTGGAACAGGTAATTTAAAACAAGGTTGGTATC
GTTCATTATCAAGTATGAGCAATGGTACGGAACGAGGTGGGACCGCTTTTCGCGTTGCTGGTGGAATGAAAGCCTATGAA
GAACCATTTGCAATTACAGGTAATTTAATTATTCCTGTTTATGATCCACAAGGTACAGGTATTTCTGGGCAAGATCCATG
TAAACCGCGTGTAGTCGGTGAAACCGATCGTCAAGTATTTTGTTTACCTTATGGTGCATGCTTAAAAACAGATGGTACTG
TGGATGGGGGGGCAGCTGGGCAAGAGTCAAAAACAGGCTTCCAAACCACGACAACGGGTTGCCCTGCTGGTGTTTCTGAG
TGTAATGATAATGTCATAGGTACTGGTATTCGAGGTCTAGCAATGGCACCGATTACAAGTTCTACGCCAAATAGTGCTTG
CTCAGATAAAACTTTGGCGGGAAATGAAAAAGGGACTGGTAAATGGGCTTGTCAGCAAATCATTAATCCAACTAGATGGT
ACGATAAATGGCTCAAATAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(653-938)

von Willebrand factor type A domain (VWA_2)

(56-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

57.692

100

0.584