Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RG306_RS19205 Genome accession   NZ_CP133666
Coordinates   4157402..4158418 (-) Length   338 a.a.
NCBI ID   WP_171067105.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4152402..4163418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS19195 (RG306_19195) pilY1 4152780..4156559 (-) 3780 WP_200150012.1 VWA domain-containing protein Machinery gene
  RG306_RS19200 (RG306_19200) - 4156575..4157405 (-) 831 WP_005035422.1 PilX N-terminal domain-containing pilus assembly protein -
  RG306_RS19205 (RG306_19205) pilW 4157402..4158418 (-) 1017 WP_171067105.1 PilW family protein Machinery gene
  RG306_RS19210 (RG306_19210) pilV 4158394..4158942 (-) 549 WP_026040258.1 type IV pilus modification protein PilV Machinery gene
  RG306_RS19215 (RG306_19215) - 4158943..4159443 (-) 501 WP_005035416.1 GspH/FimT family pseudopilin -
  RG306_RS19220 (RG306_19220) ispH 4159585..4160535 (-) 951 WP_005035414.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RG306_RS19225 (RG306_19225) gmk 4160670..4161290 (+) 621 WP_005035411.1 guanylate kinase -
  RG306_RS19230 (RG306_19230) rpoZ 4161403..4161684 (+) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36578.40 Da        Isoelectric Point: 7.8807

>NTDB_id=875772 RG306_RS19205 WP_171067105.1 4157402..4158418(-) (pilW) [Acinetobacter bereziniae strain UCO-553]
MSHDGGILVKYKNNLHARKGFTLLELIVAIAIGLIIAAAAMQLFIGGFLTSRMQEANAELQNSGIFGLDYMTRDIRLANF
GNTRPDLNDQTPLGGIILTARDAVDTNTNITFPSSAPFISKGLLSHSKGNQEDVSGVKNEWQGLSNVNQTSDQLTIQFVA
PNEMVNCEGNNVQEGDYVIQRYFLRQDPADASSGNNFALACDANTPTASGVTPVANPSTISGFGDAGQVIMPRVDHFVVQ
LGVRDSNNRLAYYSINQYRAEASKARAKTPAVVPPRIVAVKIAVLVRSMDDTKNQNIDLSKTISVLNQDITLKDTSTLYA
RRVYSTTVALRNGLGVPK

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=875772 RG306_RS19205 WP_171067105.1 4157402..4158418(-) (pilW) [Acinetobacter bereziniae strain UCO-553]
ATGTCTCATGATGGAGGCATACTAGTGAAATATAAAAATAATTTGCATGCCCGGAAAGGATTTACACTTTTAGAGTTGAT
CGTTGCAATAGCAATTGGACTCATCATTGCCGCTGCAGCGATGCAACTTTTTATAGGTGGGTTTTTGACATCACGAATGC
AGGAAGCAAATGCAGAATTACAAAACAGTGGTATCTTTGGTTTAGATTATATGACCCGAGATATTCGCCTTGCCAATTTT
GGTAATACTCGTCCTGATTTAAACGATCAGACACCTCTTGGTGGAATTATTTTAACGGCAAGAGATGCTGTAGATACAAA
TACAAATATTACATTTCCATCTTCGGCACCATTTATTTCTAAAGGTTTATTAAGCCATAGCAAAGGTAATCAGGAAGATG
TTAGTGGGGTCAAAAATGAGTGGCAAGGTCTATCTAACGTAAACCAAACTAGTGATCAGTTGACGATTCAATTTGTAGCC
CCAAATGAAATGGTGAATTGTGAGGGGAATAACGTTCAAGAAGGCGATTATGTGATTCAACGTTATTTCTTAAGACAAGA
TCCTGCTGATGCGAGTTCTGGAAATAATTTTGCTCTGGCTTGTGATGCGAATACGCCAACAGCTTCAGGAGTAACTCCAG
TTGCAAACCCGAGTACAATTTCAGGGTTTGGCGATGCTGGACAAGTGATTATGCCGCGAGTTGATCATTTTGTTGTGCAA
TTGGGGGTGAGGGACAGTAATAATCGTCTTGCATATTATTCAATCAATCAATATAGAGCTGAAGCCAGCAAGGCAAGAGC
AAAAACGCCTGCTGTTGTTCCTCCACGAATTGTTGCTGTAAAAATAGCAGTATTAGTACGCTCCATGGATGATACGAAAA
ATCAGAATATTGATTTGTCAAAAACTATATCAGTTTTAAATCAAGATATTACATTGAAGGATACATCGACTTTATATGCG
CGTCGAGTATATTCAACGACAGTTGCCTTACGTAATGGTTTGGGAGTTCCTAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(17-41)

Type IV Pilus-assembly protein W (PilW)

(220-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

51.829

97.041

0.503