Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RG306_RS02230 Genome accession   NZ_CP133666
Coordinates   492287..492928 (-) Length   213 a.a.
NCBI ID   WP_005034159.1    Uniprot ID   N9EEW6
Organism   Acinetobacter bereziniae strain UCO-553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487287..497928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG306_RS02195 (RG306_02195) mlaE 487415..488194 (+) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  RG306_RS02200 (RG306_02200) - 488194..488871 (+) 678 WP_004825227.1 outer membrane lipid asymmetry maintenance protein MlaD -
  RG306_RS02205 (RG306_02205) - 488892..489515 (+) 624 WP_005034162.1 phospholipid-binding protein MlaC -
  RG306_RS02210 (RG306_02210) - 489550..489837 (+) 288 WP_005034161.1 hypothetical protein -
  RG306_RS02215 (RG306_02215) - 489957..490970 (-) 1014 WP_004825220.1 magnesium and cobalt transport protein CorA -
  RG306_RS02220 (RG306_02220) - 491129..491725 (+) 597 WP_005034160.1 TIGR00730 family Rossman fold protein -
  RG306_RS02225 (RG306_02225) - 491846..492241 (+) 396 WP_010590771.1 NUDIX domain-containing protein -
  RG306_RS02230 (RG306_02230) comF 492287..492928 (-) 642 WP_005034159.1 ComF family protein Machinery gene
  RG306_RS02235 (RG306_02235) recG 493104..495149 (-) 2046 WP_005034158.1 ATP-dependent DNA helicase RecG -
  RG306_RS02240 (RG306_02240) - 495196..495972 (+) 777 WP_005034156.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24857.95 Da        Isoelectric Point: 9.5711

>NTDB_id=875753 RG306_RS02230 WP_005034159.1 492287..492928(-) (comF) [Acinetobacter bereziniae strain UCO-553]
MLQFIHQLLHKGVQYISPCLLCGIDQQQAHSLCQDCWNQLPWYKQSIERHEQQILCAHHYDFPIDRIIQTYKYEQQLQYQ
NVLAHSLLNLRFSRVQAIVPMPISTERLKERGYNQMLIVAKIMAKQLKIPVWQPVVRQAQHSQKGLSRVERLENIEHQFR
TIQSEKRKYKKVLIVDDVVTTGSSIHALTQALQRLGCQQISSLCIAAAHPSLK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=875753 RG306_RS02230 WP_005034159.1 492287..492928(-) (comF) [Acinetobacter bereziniae strain UCO-553]
ATGCTCCAATTTATCCATCAACTGCTCCATAAAGGCGTTCAATATATTTCTCCATGCTTACTGTGCGGCATTGACCAACA
ACAAGCTCACTCCTTATGTCAGGACTGTTGGAATCAACTCCCTTGGTACAAACAATCCATAGAGCGACATGAACAACAAA
TACTTTGCGCACATCACTATGATTTCCCAATTGATCGCATCATTCAAACTTATAAATATGAGCAACAATTACAATATCAA
AACGTGCTTGCACATAGTTTATTAAACTTAAGATTTTCTAGAGTTCAAGCGATTGTTCCCATGCCCATTTCAACAGAGCG
CCTTAAAGAACGGGGTTATAACCAAATGTTGATTGTGGCTAAAATTATGGCAAAACAATTAAAAATTCCTGTTTGGCAAC
CCGTGGTTCGACAAGCTCAACATTCACAAAAAGGCTTAAGTCGAGTTGAACGACTGGAAAACATTGAGCATCAATTTCGA
ACCATTCAATCCGAAAAGAGAAAATATAAAAAAGTATTGATTGTGGATGATGTGGTCACAACAGGAAGTTCAATTCATGC
CCTCACCCAAGCTTTACAACGCTTGGGCTGTCAGCAGATTTCCAGTCTTTGTATTGCAGCAGCACATCCTTCTCTGAAAT
GA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9EEW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.111

92.958

0.568
  comF Acinetobacter baumannii D1279779

60.606

92.958

0.563