Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   RGC87_RS09500 Genome accession   NZ_CP133660
Coordinates   1875288..1876274 (-) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JH4322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870288..1881274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGC87_RS09475 (RGC87_09475) - 1870548..1870895 (-) 348 WP_001242102.1 hypothetical protein -
  RGC87_RS09480 (RGC87_09480) - 1871081..1871674 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  RGC87_RS09485 (RGC87_09485) - 1871778..1872143 (+) 366 Protein_1841 truncated hemoglobin YjbI -
  RGC87_RS09490 (RGC87_09490) yjbH 1872166..1872972 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  RGC87_RS09495 (RGC87_09495) pepF 1873432..1875240 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  RGC87_RS09500 (RGC87_09500) coiA 1875288..1876274 (-) 987 WP_000959289.1 competence protein CoiA Machinery gene
  RGC87_RS09505 (RGC87_09505) mecA 1876395..1877114 (-) 720 WP_001217728.1 adaptor protein MecA -
  RGC87_RS09510 (RGC87_09510) spxA 1877485..1877880 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  RGC87_RS09515 (RGC87_09515) trpS 1878175..1879164 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  RGC87_RS09520 (RGC87_09520) opp4C 1879206..1880087 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  RGC87_RS09525 (RGC87_09525) opp4B 1880099..1881061 (-) 963 WP_020978105.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=875692 RGC87_RS09500 WP_000959289.1 1875288..1876274(-) (coiA) [Staphylococcus aureus strain JH4322]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=875692 RGC87_RS09500 WP_000959289.1 1875288..1876274(-) (coiA) [Staphylococcus aureus strain JH4322]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979